Ferrimonas lipolytica: HER31_16970
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Entry
HER31_16970 CDS
T06529
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fes
Ferrimonas lipolytica
Pathway
fes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HER31_16970 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fes03021
]
HER31_16970 (rpoC)
03400 DNA repair and recombination proteins [BR:
fes03400
]
HER31_16970 (rpoC)
Enzymes [BR:
fes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HER31_16970 (rpoC)
Transcription machinery [BR:
fes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HER31_16970 (rpoC)
DNA repair and recombination proteins [BR:
fes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HER31_16970 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QIZ78438
UniProt:
A0A6H1UHY4
LinkDB
All DBs
Position
3737356..3741567
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDLLQFLKKQNTSEEFNGIKIGLAAPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIEPGMTALERGQMLTEEEYLDALEEHGDEFDARM
GAEAVQELLKDIDLEAEIGVMREELPQTNSETKRKKLTKRLKLMEAFYHSGNKPEWMIMG
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKMVEREQAEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGDPVITPSQDVVLGLYYMTREKVNAKGEGMAFANVEEAEKAYRTG
QAELHARVKVRINDSFTDEDGNVIEETKIIDTTVGRSILSQILPKGLHFELINQDMGKKP
ISNVLNTCYRKCGLKDTVIFADQLMYTGFAYATVSGTSVGINDMVVPDEKKTIIADAEAE
VAEITEQFQAGLVTAGERYNKVIDIWASANEQVAKAMMENLSTDTVVNRDGVNEEQKSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFKEGLNVQQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVSQDLVIVEDDCGSEEGLIVKPLIEGGDVVEPLRERVL
GRVVGKDIIKPGTEDEVLIPRNTLLDEKLCDVIDKASVDEIVVRSVITCNTDFGVCKNCY
GRDLARGHMVAEGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRASAETNVQVKNSGSIK
LHNEKFVINADGKIVVTSRSTELAVIDDLGREKERYKLPYGAVLEIKEGDAVNAGDIVAN
WDPHTHPIITEVEGMVKFVDMIDGVTMTKQTDELTGLSSILVLDPAQRPAAGKEMRPMVK
LVDASGKDILIPGTEVAAQYFLSGNAIVNLEDGASVNVGDAVARIPQESGGTKDITGGLP
RVADLFEARKPKEPAILAEITGTISFGKETKGKRRLVITPHDGAAQYEEMIPKWRNLNVF
EGEKVERGEVIADGPEAPHDILRLRGIHAVANYIVNEVQDVYRLQGVKINDKHIEVVIRQ
MLRKCIIVDGGDTDLLPGEQAEVARVSQANRELAEGQRPATFERELLGITKASLATESFI
SAASFQETTRVLTDAATYGKRDDLRGLKENVTVGRLIPAGTGFAYHRNKAKAANVEAAPA
VSASEAEQNLADLLNASLTGGNQ
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttcagtttctaaagaaacagaatacgtccgaagaattcaacggcatc
aagattggtctggctgcgccggacatgatccgttcttggtcgttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaagccagaacgcgacggcttgttctgtgcccgt
atctttggtccagttaaggactatgagtgtctgtgtggcaagtacaagcgcctgaagcac
cgtggtgttatttgtgaaaagtgtggcgttgaagtaacccaaactaaagtacgtcgtgag
cgtatgggtcacatcgagctggcttctccagtagcacacatctggttcctcaagtcgctg
ccatcgcgcatcggtttgttgctggatatgactttacgcgacatcgagcgcgtactgtac
ttcgagtcctacgtggttatcgaaccaggcatgactgcgcttgagcgcggccaaatgctg
accgaagaagagtacttagacgccttggaagagcacggtgacgagtttgacgctcgcatg
ggtgctgaagctgttcaagagctgttgaaagacatcgatctggaagcagaaattggcgtt
atgcgtgaggagttgccacaaaccaactctgaaactaagcgtaagaagctgaccaagcgt
ttgaagctgatggaagctttctaccactctggcaacaagcctgagtggatgatcatgggc
gttctgccggttctgccgccagatctgcgtccgttggtaccattggatggtggtcgtttt
gcgacttctgatctgaacgatctgtaccgccgtgtgatcaaccgtaacaaccgtctgaag
cgtctgcttgatctagctgcaccagacatcatcgtacgcaatgaaaaacgtatgctgcag
gaatctgtagatgcgttgttggataacggccgtcgcggtcgcgccatcactggctccaac
cgtcgtccgctgaaatctctggctgacatgattaaaggtaagcagggtcgtttccgtcag
aacttgctgggtaaacgcgtagattactctggtcgttcggtaattactgtaggtcctacc
ctgcgtttgcatcagtgtggtcttcctaagaagatggctctggagctgttcaagccattc
atctacggcaagctggaagcacgtggtttagcgaccaccattaaagctgctaagaagatg
gttgagcgcgagcaggctgaggtttgggatgtactggacgaagtgattcgtgaacaccca
gtactgttgaaccgtgcacctactcttcaccgtttgggtatccaggcatttgaaccggta
ctgattgaaggtaaagcgattcagctgcacccattggtttgtgctgcgtacaacgctgac
ttcgatggtgaccagatggcggtacacgtaccgttgactctggaagctcagcttgaagcg
cgtgccctgatgatgtccaccaacaacatcttgtccccggcgtctggtgatcctgtaatc
accccgtctcaggatgtggtattgggtctgtactacatgacccgtgaaaaggtgaacgcc
aaaggcgaaggcatggctttcgctaacgttgaagaagcagaaaaagcgtaccgtactggt
caagctgaactgcacgctcgcgttaaggttcgtatcaacgacagctttaccgacgaagac
ggtaacgttatcgaagaaaccaagatcatcgataccactgttggtcgctctatcctgtct
cagatccttccaaagggcttgcactttgaactgatcaaccaagacatgggtaagaagcct
atctctaacgtactgaacacttgctaccgtaagtgtggtctgaaagatactgttatcttc
gctgaccaattgatgtacaccggtttcgcatacgccactgtgtctggtacctctgttggt
attaacgacatggttgtaccggacgagaagaagaccatcattgctgacgcggaagcggaa
gtagcagagatcaccgaacagttccaagccggtcttgtgaccgcgggcgaacgttacaac
aaagtgatcgatatctgggcctctgccaacgaacaagttgctaaggctatgatggaaaac
ttgtctaccgacaccgtggttaaccgcgatggcgtaaatgaggaacagaagtcgttcaac
agcatcttcatgatggccgattcaggcgctcgtggtagtgccgctcagattcgtcagttg
gcgggtatgcgtggtctgatggctaagccggatggctccatcatcgagacgccaattaag
gcgaactttaaagaaggtctgaacgtacagcagtacttcatctcgactcacggtgctcgt
aaaggtttggccgataccgcactgaagaccgctaactccggttacttgactcgtcgtctg
gtagacgtatctcaggatctggttatcgttgaagatgactgtggttcagaggaaggtttg
attgttaagccgctgattgaaggtggtgatgtagttgagccgttacgcgaacgcgtattg
ggccgtgttgttggcaaagacatcattaagcctggtaccgaagacgaagttctgattcca
cgcaacactttgctggatgagaaactgtgtgacgttatcgacaaagcttctgttgatgaa
atcgtggttcgttcggtaattacttgtaacaccgatttcggtgtttgtaagaactgttac
ggccgtgacttggctcgaggtcacatggtggctgaaggtgaagcggttggtgttgttgcg
gcacagtctattggtgagccgggtacccagcttacgatgcgtacgttccacattggtggt
gcggcatctcgtgcgtctgcagaaaccaatgttcaggttaagaacagcggctccatcaag
ctacataacgagaagttcgttatcaacgctgatggcaagatcgttgtaacctcccgttct
accgaactggccgttatcgatgacctgggtcgtgagaaagagcgttacaagctcccttac
ggtgcagtacttgagatcaaagaaggcgatgcagttaacgctggcgatatcgttgctaac
tgggatccgcacactcacccaatcatcaccgaagtagaaggtatggttaagtttgttgac
atgatcgacggcgtaaccatgaccaaacagaccgatgaactgactggtctgtctagcatc
ttggtactggatccggcacaacgtccggctgcaggtaaagagatgcgtccaatggtgaaa
ttggttgatgcatccggtaaagatatcctgattccaggcactgaagttgcggcacagtac
ttcctgtctggcaacgcgattgtaaacctggaagatggtgcttcagtgaacgtgggtgat
gcggttgcgcgtatcccgcaggaatctggcggtactaaggatattactggtggtctgcca
cgagttgctgacttgttcgaagcgcgtaagccgaaagaacctgcaattctggccgaaatc
accggtaccatctcgttcggtaaagaaactaaaggcaagcgtcgtctggtaatcactcca
cacgatggtgctgcacagtacgaagagatgattcctaagtggcgtaacctgaacgtgttc
gaaggtgaaaaagttgaacgcggtgaagtaattgctgatggcccagaggctccacatgac
attctacgtctacgtggcatccacgctgttgcaaactacatcgttaacgaagtgcaggac
gtataccgtctgcagggcgttaagatcaacgacaagcacatcgaagttgttattcgtcag
atgttgcgtaagtgcatcatcgttgacggtggcgataccgatctgctgccaggcgaacag
gctgaagttgctcgcgttagccaagctaaccgtgagttagctgaaggccaacgtccggca
accttcgagcgtgaactgttgggtattaccaaggcttccttggcgaccgaatcgtttatc
tcggcggcatcgttccaggaaacaactcgcgtactgactgacgctgccacttacggtaag
cgtgatgatttgcgtggcttgaaagagaacgttaccgtgggtcgtctgatcccagcaggt
accggtttcgcttaccaccgcaacaaggctaaagcagcaaacgttgaagcagcaccagct
gtatctgcgtctgaagctgagcagaacttggctgatttgttgaatgcttccctaaccggc
ggcaatcagtaa
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integrated database retrieval system
