Formica exsecta (narrow-headed ant): 115233425
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Entry
115233425 CDS
T07422
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
fex
Formica exsecta (narrow-headed ant)
Pathway
fex03013
Nucleocytoplasmic transport
fex03015
mRNA surveillance pathway
fex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115233425
09122 Translation
03013 Nucleocytoplasmic transport
115233425
03015 mRNA surveillance pathway
115233425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fex03019
]
115233425
03041 Spliceosome [BR:
fex03041
]
115233425
Enzymes [BR:
fex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115233425
Messenger RNA biogenesis [BR:
fex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115233425
Spliceosome [BR:
fex03041
]
Complex C
Other components
EJC/TREX
115233425
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115233425
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
115233425
NCBI-ProteinID:
XP_029659696
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQVVDGSGDVPAKNKEVKGTYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHT
RELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKTVCPHIVVGTPGRILALVRN
KKLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHSKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLNGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMA
LAQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLAS
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcggataatgacgatctcttggattatgaggatgaagaacagactgaacaagtagtc
gatggaagtggagatgttcctgcaaagaacaaagaagtaaagggcacatatgtttctatc
cacagcagtggatttagagattttcttcttaaaccagagattttacgtgctattgtcgat
tgtggctttgaacatccatccgaagtacaacatgaatgtattcctcaagcagtacttggc
atggatatactgtgtcaagcaaaatctggcatgggaaaaactgctgtgtttgtattagct
actcttcaacagctagaattaacggaaaatcaagtctatgtcttagtgatgtgtcacact
cgagaactagctttccaaatcagtaaagaatatgagaggtttagtaaatacatgccacat
gtaaaagttggtgtatttttcggtggcttacctattcagaaagatgaagaagtcttgaaa
actgtatgtcctcatattgttgttggcacccctggtcgtatcctcgctcttgtacggaat
aagaaattgaatctgaaacatctgaaacattttatacttgatgaatgtgacaagatgctc
gagttgttagatatgcgcagagatgtacaggaaatatttagaagcacgccacacagtaaa
caagtcatgatgttcagcgccacattgtccaaggaaatacgtcctgtctgcaaaaagttc
atgcaagatcccatggaagtctatgtcgatgatgaggcaaaactcactttaaacggtctg
caacaacattacgttaaattgaaggagaatgagaagaacaagaagttgtttgaactactt
gatgttcttgaatttaatcaggttgtcatatttgtcaagtctgtccaaagatgcatggct
ttagcgcaactcttgacagaacagaatttccctgcgattggaatccatcggggtatgacg
caggaagagcgattgtctagatatcaacagtttaaagattttcaaaagcgtattttggta
gcaacaaacttatttggacgcggtatggatatagaacgtgtgaacattgtattcaactat
gacatgccggaagattccgacacatatttacatagagtggcgcgcgctggtcgttttggc
acaaagggtcttgccattacactagtgagcgatgaaagtgatgccaagatattaaatgat
gttcaagaaaggtttgatgtaaatataacagaattaccggacgaaatcgatcttgcttca
tacattgaagggcgatga
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