Formica exsecta (narrow-headed ant): 115234152
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Entry
115234152 CDS
T07422
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
fex
Formica exsecta (narrow-headed ant)
Pathway
fex03020
RNA polymerase
fex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115234152
09124 Replication and repair
03420 Nucleotide excision repair
115234152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fex03021
]
115234152
03400 DNA repair and recombination proteins [BR:
fex03400
]
115234152
Enzymes [BR:
fex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115234152
Transcription machinery [BR:
fex03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
115234152
DNA repair and recombination proteins [BR:
fex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
115234152
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
115234152
NCBI-ProteinID:
XP_029660796
LinkDB
All DBs
Position
Unknown
AA seq
1906 aa
AA seq
DB search
MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK
IKEIVMKTKGQPRKRLAFVYDLCKSKSICEGGDEMDINKENTESQPQADRKPGHGGCGRY
QPNLRRSGLDVTAEWKHVNEDSQEKKIVLSAERAWEILKHIKDEESFILGMDPKFARPDW
MIVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQSGAAAHVILENI
KMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI
TPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPGAKYIVRDNGERI
DLRFHPKSSDLHLQCGYRVERHIHDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLS
CTSPYNADFDGDEMNLHAPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRK
MTKRDVFIEKEQMMNLLMFLPSWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNMIRTHS
THPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHDVCGR
FYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEP
TPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIAC
VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL
IDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLP
TIKMSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRAVLR
EIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPSDLSPMRVIQGVKDLLDKCIIVAGDD
RLSKQANENATLLFRCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMV
GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAA
ARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKI
SPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDN
KFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETG
EFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVL
QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHA
EVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKSGIEIPMAVGAGMGTAGMFFGSVTG
ISNSMSPQMTPWMGATPGYGASSMSPALSSSMTPGGACFSPSGASDASGLSPAYSAYSPQ
PGSPGSPGPSMSPFPMSPAGAASPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPN
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNY
TPASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPAS
PTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPSSPTYSPTSPQYSPSSTKY
SPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDE
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atggctacgtccgattccaaggcgcctttacggacagtgaaacgcgtacaatttggtatt
ctttcgccggatgaaatacgtcgtatgtcagtcacagatggcggcatacgatttccagaa
actatggaaggtggccgccctaaactgggcggtctcatggatcccaggcaaggggtcatt
gacagaaattctagatgtcagacatgcgccggcaatatgacagagtgccctggccatttt
ggtcatatagatcttgctaaaccagtatttcatgtaggatttattacaaagactataaag
atactgagatgcgtgtgtttctactgttccaaactgctcgttagcccacataatccaaag
atcaaagaaattgtcatgaagacaaagggacagccacggaaacgacttgcatttgtttac
gatttatgcaaaagcaagagcatctgtgaaggcggagatgaaatggacattaacaaagag
aacacggaaagtcagccgcaggcagatagaaaacctggtcacggtggttgcggcagatat
cagcctaatctcagacgatccggtttagacgtcaccgcggagtggaagcacgtaaatgaa
gactcgcaagagaaaaagattgtactctcggctgagagagcgtgggaaattctgaaacat
attaaggatgaagaatcctttattctgggcatggacccgaaatttgctcgaccagattgg
atgatagttacggtattaccggtgccgccattatctgtcagacctgcagtcattatgtac
ggctccgccaaaaatcaggacgatctgacgcacaaactggcggacatcatcaaatcgaac
aacgaactgctgcgaaacgaacagtcaggcgcagcagcacatgtgattcttgaaaacata
aagatgttacaatttcacgtggcgacactcgttgacaacgatatgcctggcatgccacga
gcgatgcaaaaatcgggcaaaccgctcaaagcgatcaaagcccgtctgaaaggaaaagag
ggtagaattcgaggaaacctcatgggcaagcgtgtagacttttccgctcgtactgttatc
acgcctgatcccaacttgcgcatcgatcaagttggcgtgccgcggagcattgcacagaac
ttgacgttccccgagatcgtgacgccatttaacatcgataagatgcaagtgttagttaga
cgcggcaattcgcaatatcccggcgcgaaatacatagttcgcgacaatggtgaaaggatc
gatctgcgttttcatcccaaatcttcggatctgcatctgcaatgcggctatcgggtggaa
cgacacatccacgacggtgatctcgtcatcttcaatcgtcagccgactctgcataaaatg
tcaatgatgggtcatcgcgtcaaagtgttaccgtggagtacgttccgcatgaatttgagc
tgcacatccccctacaatgccgatttcgacggagacgaaatgaatttgcacgcgccacaa
tcgatggagactcgcgcggaagttgaaaacattcatataacgccgcggcaaatcattaca
ccgcaggcgaacaagccagtaatgggtattgtacaggatactctgacggctgtaagaaag
atgacgaagcgcgatgtgttcatcgagaaggagcagatgatgaatctgctcatgttcctg
cccagctgggacggcaagatgccgcaaccgtgtattctgaaaccgaaaccactgtggacc
ggtaagcaattgttttccctcattattccgggaaacgtgaacatgatacgaacgcacagc
acacatcccgacgaagaagacgacggtccatacaagtggatctcaccaggtgatacaaag
gtaatggtggagcacggggaactggtgatgggtatcctctgtaaaaaaaccctgggaacg
tccgccggctctttgcttcacatctgtatgctcgagctcggccacgatgtatgcggacgc
ttctatggcaacattcagaccgtcatcaataactggttgttgctggagggtcattcgatc
ggtattggcgacaccatcgccgatccgcagacatacctggaaattcaaaaggcgatcaag
aaggccaaagaggacgtgatagaggtaattcaaaaggcgcacaacatggaattggaaccc
acacccggcaacacgttgcgtcagactttcgaaaatcaggtgaacagaattttaaacgac
gctcgagacaagaccggaggttccgccaagaaatctctaacggaatacaacaacttgaag
gctatggtagtatctggctcgaagggttccaacatcaacatttctcaggtaattgcttgt
gtgggtcagcagaacgttgagggtaaacgaatacccttcggtttccgcaagcgaacgctt
ccgcatttcatcaaagacgactacggacccgagtcccgtggctttgtcgagaactcgtac
ctcgccggtctcacgccgtcggagttttacttccacgctatgggcggtcgtgagggtctt
atcgataccgccgtgaaaacggccgagaccggttacatccagcgtcgtttgataaaggct
atggagtcggtaatggtgcattacgacggtaccgtgcgcaattcggttggtcaattgatc
cagctgcgttacggagaggacggtctctgcggcgagactgtcgagttccaaaatctgcct
actatcaaaatgagcaataaagccttcgagaagaaattcaaattcgatccgaccaacgag
cgatacctacgacgcatattcaacgaggacattgtacgagaaatgatgggctccggtgag
gtgatctccgagctggaaagagagtgggagcagttgaacaaagatcgcgctgtgctacgg
gagatcttcccaagtggtgaatccaaggttgtgttgccatgcaatcttcaaagaatgatt
tggaacgtgcaaaagatattccatatcaacaagcgagcgcctagcgatcttagtcccatg
agagtgattcaaggcgtaaaggatcttctggataaatgtatcatcgtcgcaggggacgac
agacttagcaaacaggcaaacgaaaacgcgacattactatttcgatgcttggtgagatca
actctatgcacgaaatgcgtttccgaggaattcaggttgtccagcgaagcctttgagtgg
ctgatcggagaaatcgaaactagattccaacaggctcaagtatcgccgggcgaaatggtg
ggtgcgttagcggcgcagtctctcggcgaacccgctactcagatgaccctgaatactttc
cacttcgctggtgtatcatcaaagaacgtcacccttggtgtaccgaggttgaaggagatc
atcaacatcagtaagaaaccgaaagcgccatcgctcacggtattcttgacgggcgcggct
gcgcgagacgccgagaaggcgaagaatgtgctctgccgattggaacacacaacactgaag
aaggtgacggccaacacggcgatatattacgatccggacccgcaaaacacggtcatcgcg
gaggatcaggaattcgtcaacgtatactacgagatgcccgacttcgatcctaccaaaata
tcaccgtggttgctacgcattgagctggataggaagcgaatgaccgataagaagctgacc
atggaacagattgcggagaagatcaatgccggcttcggcgacgatttgaattgcattttc
aacgacgacaatgccgagaagctggtgctgcggatccgaataatgaatagtgacgacaac
aagttccaggatacggatgaagagactgtagacaagatggaagacgatatgttcttacga
tgcatcgaagccaacatgcttagcgacatgactctacagggtatcgaagctattggcaag
gtttatatgcatttaccacaaactgactctaaaaaacgcatcgttatcacggaaacgggc
gaatttaaggccattgcggaatggcttttggaaactgacggaacgagtttgatgaaagta
ttgagcgaaagagacgtagatccggtacgaacattcagtaacgatatctgcgagatattc
caagttctgggtatcgaggccgtgcgaaagtcggtagaaaaagagatgaatgcagtactg
cagttctatggtctttatgtcaactatcgacatcttgctttactttgcgacgtcatgacg
gcaaagggtcatcttatggcgataacacgtcacggaatcaatagacaagataccggcgct
ctcatgagatgctctttcgaagaaacggttgacgtgttactggacgctgcatctcacgcg
gaagtagatccaatgcgaggagtatccgaaaacattataatgggacaacttccacgcatt
ggaacaggatgtttcgatttattactcgatgctgagaaatgcaaatccggcatcgaaatt
cctatggcggttggcgcaggtatgggaacggctggaatgttcttcggcagcgtaactggt
atatccaacagtatgagtcctcagatgactccttggatgggagctactcctggttacggc
gcatcaagcatgtctccggctttgagtagtagcatgacgccaggaggtgcgtgcttctcg
ccgtcgggcgcgtcggatgcgtcgggattgtcgcccgcgtattccgcttattcaccacaa
ccaggaagtcctggtagtccgggaccgagcatgagtccattcccgatgtcaccagcgggc
gcggcctcgcccagttactctcccacgtcgccggcatatctgcctacatctcccagtatg
acaccgtcgagcccgaactattcgcccacgagcccgacatactcgccgaccagtccgaac
tattcgccgacgtcaccaagttattcaccgacgagtccgagctattcaccgacatcgcca
agttactcgccgacgagcccaagttactcgcctacttcaccaagttattcaccgacaagc
ccgagctattcacctacatcgccgagctattcaccaacgagcccgagctattcacccaca
tcgccaagctattcaccaacctcgccaagttattcacccacgagcccgagttattcgcct
acgagtccaagttattcgccgacgagtccaagttactcgcctacaagtccaagctactcg
cccacgagtccgagttactcgccgacttcgccgagttattcacctagctcacccaattac
acacctgcctcgccttcgtactcgcccacctcgcctagttattcaccgagctcgccgcaa
tactcgcccgcgagtccaagctactcccccagcagtcccaagtattcgccaacgagcccg
agttactcgcctacctcaccatcgttcgccggtacgtcgccgcaatacacgccagcgagc
cccacgtactcaccaaccagtccgacatattcgcccacgagtccgtcgtattcgccgagc
tcaccgcaacacaccgcatccggtagcacccggtattcgcccagtagtccaaactattca
cctagcagcccgacgtattcacccacgagtccgcaatactcaccgtcaagcaccaagtat
tcacctacaagtcccacttacacgcccacaagcccaagttattcaccgacgagtccaacg
tattcgccaccggtgccaggatactctcctacgagtcccacatactcgccggcatcgccc
gcttacgaaacagatgaataa
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integrated database retrieval system
