Formica exsecta (narrow-headed ant): 115235105
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Entry
115235105 CDS
T07422
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
fex
Formica exsecta (narrow-headed ant)
Pathway
fex03022
Basal transcription factors
fex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fex00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115235105
09124 Replication and repair
03420 Nucleotide excision repair
115235105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fex03021
]
115235105
03400 DNA repair and recombination proteins [BR:
fex03400
]
115235105
Transcription machinery [BR:
fex03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115235105
DNA repair and recombination proteins [BR:
fex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115235105
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_TFIIH
BSD
BBL5
Motif
Other DBs
NCBI-GeneID:
115235105
NCBI-ProteinID:
XP_029662551
LinkDB
All DBs
Position
Unknown
AA seq
559 aa
AA seq
DB search
MTTSSEDVLMQVSQVRYKKGDGTLYVMNERIAWMLDNRDTVSVSHKYGDIKSQKISPEGK
SKIQLQVVLHDGTSSTFHFVNKNGQEAQIKDRDDVKELLQQLLPKFKRKVNKELEEKNRT
LQEHPMLLQLYRDLVITQVISSEEFWSQHAAEYTQAKKIQRQEIGVNSAFLADIKPQTDG
CNGLKYNLTVDIIECIFKTYPAVKRKHQENVPHKMSESDFWTKFFQSHYFHRDRINAGTK
DLFTECAKIDDQELKKELQSGINDPLVDITSFEDQTLDENYGSGCNKSDKTSGNIVHQSM
IKRFNQHSIMVMKASTAKQSTQTNQPQLNGSTPSASKVTNNELDAGPKTKKSRIQEKLTY
DDLDTSCDIHMNKETPLHLSHVDRYLHGPIPGYGNTEPTSEELLITLSQLKKEASGWLYG
NMLPRQAATSLVSPAAAVSALGELTPGGSLMKGFREESLGQLIPKDLEKELCNVYVCACE
LLRHFWRSFPPTTPQLEEKAIRMHESLHRFHSAKLKPFEDRVQREFSAVSQHLTSHLNQL
LTAAYGKFAMWQQRKMQMR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgactacgtcgtcagaagatgttttaatgcaagtgagtcaagtacgttataaaaaagga
gatggtactttatatgtgatgaacgaacgaatagcatggatgctcgataacagagatact
gtatctgtcagccataaatatggcgatattaaatcgcaaaaaatatcaccagagggaaaa
tcaaagattcaactgcaggtggtattacacgacggtacatcatctacatttcactttgta
aataaaaatggacaagaagcacaaattaaagatcgagacgatgtaaaggagttgctgcaa
cagctactaccaaaatttaagagaaaagttaataaagagttagaagagaaaaacagaacc
ctccaagaacatcccatgttgctccaattgtatcgtgatctagttatcacacaagttata
tcatccgaggaattttggtctcaacatgctgcagagtatacacaagccaaaaagattcaa
cgccaagagataggtgttaatagtgcttttctagcagatattaaaccacaaactgatggc
tgcaatgggttaaaatacaatttaaccgtcgatataatagaatgtatatttaagacttac
ccagccgttaagaggaaacatcaggaaaatgtgcctcacaaaatgtcagagtctgatttc
tggacaaagttctttcagtcacattattttcacagagatcgtatcaatgctgggaccaag
gatctttttaccgaatgtgccaaaatagatgatcaagaacttaagaaggaacttcaatct
gggataaatgatcctttggtagatatcacttccttcgaggatcaaacgctggatgaaaac
tatggaagcggatgtaacaagtctgataaaacatcgggaaatatcgttcatcaaagtatg
atcaagaggttcaatcaacatagtataatggttatgaaagccagcactgccaaacaatcg
acacaaactaatcaaccgcaattaaatggatctacaccgtctgcgagtaaagtaacaaat
aacgaactggacgctggaccaaagactaaaaaaagtagaatacaagaaaagctaacttac
gatgatcttgacacgagctgtgacatacatatgaataaggaaacaccattgcatctgtcg
catgtagatagatatttgcatggacctataccaggatatggaaatacagaaccaacttca
gaagaattacttattacattaagccaattaaaaaaagaggcttctggatggctgtatggt
aacatgttaccgcgacaggcagcgacatccttagttagtccggctgcagcagtatcggct
ttaggtgaattaacgcctggcggatctttaatgaaaggttttcgggaagagagtctcgga
caattaataccaaaggatttggagaaagaattgtgtaatgtatatgtatgcgcatgcgag
ttgttgaggcacttttggcgaagttttcctccaacgacaccacaactcgaggaaaaagca
atcagaatgcacgaatctttacatagatttcattctgctaaattaaaaccttttgaggat
cgtgtgcaaagagaattctccgcagttagtcaacacttgacaagtcatctcaatcaattg
ctaaccgctgcatatggaaagtttgcaatgtggcaacagcggaagatgcaaatgaggtag
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