Formica exsecta (narrow-headed ant): 115238471
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Entry
115238471 CDS
T07422
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fex
Formica exsecta (narrow-headed ant)
Brite
KEGG Orthology (KO) [BR:
fex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fex03016
]
115238471
Enzymes [BR:
fex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
115238471
Transfer RNA biogenesis [BR:
fex03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
115238471
Prokaryotic type
tRNA splicing ligases
115238471
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF6471
ScdA_N
Motif
Other DBs
NCBI-GeneID:
115238471
NCBI-ProteinID:
XP_029668186
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYQEELKYLEKIDECCWRIKKGFQPNMNVEGVFYVNNTLERLMFDELRNACRPGAI
GGFLPGMKQIANVAALPGIVWRSIGLPDVHSGYGFAIGNMAAFDMDDPKSIVSPGGVGFD
INCGVRLLRTNLFERDILPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAACKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SQEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKQFNSSPDDLDMHVIYDVSHNIAKIE
EHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
KETFGSTCHGAGRALSRAKSRRNLDYKQVLEKLEELGISIRVASPKLVMEEAPESYKNVT
DVVNTCHTAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgcggcaatatcaagaggaacttaaatatctggaaaaaatagatgaatgttgt
tggagaatcaaaaaaggctttcaacctaatatgaatgttgaaggagtgttttacgtgaac
aatacattggaacgtttaatgtttgatgagttgcgcaatgcatgtcgaccaggtgcaatt
ggaggtttccttcctggaatgaaacagattgctaatgttgcagctctgcctggtattgta
tggagatctattggattaccagatgtacactctggatatggctttgctattggtaatatg
gcagcatttgacatggatgatccaaaatcgattgtatcacctggtggtgttggttttgat
ataaattgtggtgttcgtctattgcgaacaaatttatttgagagagacatcctaccagta
aaagaacaacttgcgcaaagcatgtttgatcacattccagttggtgttggatctaaagga
attataccaatgaatgcacgagatttagaggaggcattagaaatgggaatggattggtct
ttgagggaaggttacatttgggctgaagataaggaacactgcgaagaatatggaagaatg
cttaatgctgatccatcaaaagtatcaatgagagctaagaaacgtggacttcctcaatta
ggtacattaggagctggaaatcattatgcagagattcaggtggtagatgaaatatatgat
aagtgggctgcatgtaaaatgggtatcgaagaaaaaggccaaatttgtgttatgattcat
tcaggaagcagaggatttggtcatcaagttgctacagatgcacttgtgcaaatggaaaag
gctatgaagcgagataacatagaaaccaatgataggcagctagcatgtgctcatattaaa
tctcaagaaggccaagattacttaaaggcgatggcagctgctgctaattttgcttgggtt
aacaggagttctatgacatttcttactcgacaggcatttgcaaaacaattcaactcatct
cctgatgacttagatatgcatgttatttatgatgtttctcacaatattgccaaaatagaa
gaacatatggttgatggaaaacaaaagacacttttagttcatagaaagggatcaacaaga
gcgtttccaccacatcatcctttgattcctgtggattatcagttgacaggccaaccagtt
ttaattggtggtactatggggacctgtagttacgttctaactggtacagaacagggtatg
aaagaaacatttggatcaacgtgtcatggtgctggtcgtgctctttcaagagcaaaatca
cgtagaaatttagattataagcaagttctggaaaaattggaagagttaggcatatcgatt
cgagttgcttcaccgaaattggttatggaagaagcgccggaatcctataaaaatgtaaca
gacgttgttaatacttgccacacagctggaatctccaagaaatgcattaagcttcgacca
attgcagtcattaaaggataa
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