Formica exsecta (narrow-headed ant): 115239227
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Entry
115239227 CDS
T07422
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
fex
Formica exsecta (narrow-headed ant)
Pathway
fex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115239227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fex03019
]
115239227
Messenger RNA biogenesis [BR:
fex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115239227
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115239227
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
115239227
NCBI-ProteinID:
XP_029669488
LinkDB
All DBs
Position
Unknown
AA seq
2408 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLSKKNYEDSCQEISVLVQWHGLEADRHFLRCLISCVDFSKG
ELSESSAKDYFQAKLLKQECNSLLSKPSFISNLCFAIDNPLHHQKSLNSSPKFFVNLKKT
LGLTLVQEVAFAIALQHSENTEIRLLALEHTQKQLPELIKNYINSETINKHHEGGLHDSL
PQVLQLILGQVFHTSNPYNLSVEAKEKFLQNLRRDFPRELVPVVLAPFLYPGDGETPHFK
IEFNMAVNQMDNNTLVELIMELGYSFTSSVDECRSALTGLGAREIPPTCVARVLAHMARS
CSSLDDAGGLQSFWGNSAASQDSNKEKPSDSTIPTTWNVEVFIQTLKEMQSTLSWNDVIV
KLDHAEFIIKDRQGLSLLITGLKLGLQHQGYPPDMFPVELFYRHWDNVEGQFSLIQQILK
CPDIFCFADYPYHSVTVDVLKAAPESDSKEGQTWRSLNIVELLLHMAERGLYNSVQEIFK
WPVQHCPDVLVLALLQINPPLTLLRQELFTTLLPIFLGNHPNSAVILHHAWHANNTKIKS
IIMHAMADWYTRGDHDQTRLSRILDVAQDLKALSALLNSPSFPFVIDLACLASRREYLKL
EKWLTDKIRDHGEVFVAACVKFLQRRCPQVMGPGIKEDPTVPKASQLPQETLTTILACLQ
VCAGSVSQELSELIMTMVQNCSLMLSKSTMNRPPPPGVLRHRGLEPFNPATLGSQLFSSK
QVDPLGNLSSSLATMGLGTGLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFSILP
LSSQLHSGPVGTQGPSVLPGGTIGGLGRLGPPTGIEKARIPETSNLFPDMGQNVSKEVED
EANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGIRREREVFNCMLRNLFEEYRFFPQYP
EKELQITAQLFGGIIERGLVNSYMTLGLALRFVLDALKKPEASKMYYFGITALDRFKSRL
KDYQTYCEHVRTIPHFNEFPQHLIEYIEYGLQGQEPPSRPQGPVLPKTLAAMLAPVTTPY
KTMTTTTVTTSTTQAKPSTTPTTSLSARPSMPSVANATNIDTLLVATDKEEKITTPPEAL
QDKTAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDC
IKLPEVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILQIDI
DLKSLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDL
KLNLKFEIEVLCKNLSIDVGELKPVIYLKDPEKLRNLEYQLSHPNKKSETTSNQQQSQGP
IEELVGTTTSGGAVINPQSAPPANTTPSLPTGGAPEPRFNYMDISVTGIANISQHITINN
QLPLFQTHPHLKQFVRPAVERAIQEWIHPVVDRSIKIALTTSEQIVKKDFALDPEELRIR
TAGRNMVRNLTAGMAMITCRDQILASISTNLKQALLTALIGTTPQQKELAEQAANVVAAD
NMELACAFVQKTAIEKAIPEMDKRLLSEMELRKIARQEGRRYCDPLAKYQAERMPEQIRL
KVGGVTPQQMAVYEEFARNIPGFLPLSERDTQVLFMPKPINETPVTTFTPNSAVAVATAQ
QVAAYAAAVSNDEVGAMLEKLAAEAEVLLAAAGPAAPPTQHATFHNLLETIILTRRSRDA
GAAMTLLKKAVEGLVDGLILSSNVIDSENLVQRYRELHLRILKCLQDPRAYGMQWTNKHV
TRCLTEYREEFRYNFEAVDYLIRSHLISLPQFDVALAQAMEAGSAMATAFAMQLVQLYLI
DERQATHVTETDLFHTIEILARMAHHRTPPEGILLFRLTSLVDSLRANHDSGVLVDRAPA
GPTAHIHSGILQVRARDFDDPPGLMEKTEYLLREWVQMHHSPQHARDPTKAFSIFVHQMN
IHGILKTDDLITRFFKLSTQMCVDLCYRALSETATAPSIMRAKCFHSLDAFVRLVALLVK
HSGDATNTHTKINLLNKVLGIVAGVLLQDHEIRGTDFQQLPYHRIFIMLFLELCAPEPVL
EAVNFQVLTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLL
IDLFKYLAPYLRNAELAKPVTSLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQM
RNLILSAFPRNMRLPDPFTPNLKVDMLQEIAHAPRVLTNFASTIQPLTFKKELDSYLKAR
APVTFLSELRSNLQVSQEAGVRYNIQLMNALVLYVGTQAIAFIRSKGHAPNMSTIAHSAH
MDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRV
LLERLIVNRPHPWGLLITFIELIKNPTYKFWSHEFVHCAPEIEKLFESVARSCMVQKQVP
TTETEIPE
NT seq
7227 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcgaatttg
agtaagaaaaattacgaggacagctgtcaagagatatcggttttggtgcagtggcacggt
ctggaagcagatcgacatttcttgcgctgtctgatttcgtgcgttgacttttccaagggt
gagttgtcagagtcgagcgcgaaagattattttcaagcaaagttgctgaaacaagagtgc
aacagtttactgagcaaaccttcttttatatctaacctgtgctttgctatagataatcct
ttacatcatcaaaagtcgttgaattcctctccaaagttttttgtcaatttaaaaaaaact
ctcggcttaaccttggtgcaggaagttgcatttgcgattgcgttacagcattcggaaaac
acagaaatccgtttgttagctttagagcatactcagaagcaattgcctgaattaataaaa
aattatataaattccgagacgatcaacaagcatcacgagggtggtttgcacgattctttg
cctcaagtccttcaattgatacttggccaagtttttcataccagcaatccttataactta
tccgttgaggcgaaagaaaaatttcttcaaaaccttcggcgcgattttccccgtgaactg
gtaccagtggtgttagcaccattcttgtacccaggagacggggaaacaccacatttcaag
atcgagttcaacatggctgtcaatcagatggataacaatactctggtggagttgattatg
gaattaggatatagctttaccagtagtgtggacgaatgccgatcggcattgacgggttta
ggcgcgagggaaataccgccgacatgcgttgctcgtgtgttggcgcatatggcacgcagt
tgtagcagcctcgacgatgctggtggtttacaatcgttttggggtaattcggccgcctcg
caggactcgaataaggaaaaaccatcggacagtaccattcccacgacatggaacgtggaa
gtatttattcaaactttaaaagaaatgcaatctacattatcttggaacgatgtcatagtg
aagttggaccatgcagagtttattatcaaggataggcaaggtttaagcttattgattacg
ggtcttaaattaggtctccaacatcagggatatccgcctgacatgtttcccgtcgagcta
ttctatcgacactgggataatgtagagggtcaattctctttgattcaacagattctcaag
tgtccagatatattttgtttcgccgactatccgtatcattcggtaactgtcgatgtattg
aaggcagctcctgagagcgatagcaaagaaggtcaaacgtggcgatcgctgaatatagtc
gaactgcttctgcatatggccgagagaggcttatataattctgtacaagaaatatttaag
tggccggtgcaacactgcccggacgtgctcgtcttggcgttgttacaaataaatccgccg
ctcacgttactgagacaggaactctttaccacattattgccgatctttctcggcaatcat
ccaaattctgctgtgatactgcatcacgcatggcatgccaataatactaagataaagtcg
attataatgcatgccatggcggattggtatacacgcggtgatcacgatcaaacaagattg
tctcgaattttggatgttgcgcaagatttaaaggctctttctgctttactcaattcgcca
tcttttccattcgtcattgatctcgcttgtttggcgtcccgacgagaatatttgaaattg
gaaaaatggctgacagataaaatcagggatcacggagaagttttcgttgccgcgtgcgtc
aagttcctgcaacgacgatgtcctcaagtcatgggtcctggtataaaggaagatcctaca
gttcccaaagcgagtcagttaccgcaggaaacgctcactacaatattggcttgtttacaa
gtttgcgctgggagtgtctcccaagaactctcggaattaataatgacgatggtgcagaat
tgcagtctaatgttgagtaagagtactatgaacagaccaccaccgccgggagttttgaga
catcgaggattagaaccgtttaatccagcaactttgggaagccagttattttcctcgaag
caagtagatccccttgggaatctcagttcgagtctcgctactatgggtcttggcacgggt
ctcggacctccgagtagttctgcgtttaatttgcccggcgctctaggacctctagtttcg
gcacccggctctccctcgcgactcatgggaccttctccgagtccgttctccatattgccc
ttatcctcgcaactacactcgggtccagttggtactcaaggaccgtccgtacttcctggt
ggtacgataggcggattgggacgtctcggaccgccgaccggtatcgagaaagcgagaatt
ccggaaacctcgaatctgttcccggacatgggtcaaaatgtatccaaagaggtcgaggac
gaggcaaacagctattttcaacgtatatacaatcatccgccacacccgactttgtcgatc
gacgaggtgctcgatatgttaaaaaaatttcaagattccggtattagacgggagagagag
gtgtttaattgtatgttgcgaaatttattcgaagagtatagatttttcccgcaatatccg
gagaaagaactgcagataacggcgcaattgttcggtggaattatcgagagaggtctcgtc
aacagttacatgactctcggattggcgctaagatttgtcctcgacgcgctcaagaaaccg
gaggctagcaaaatgtactatttcggtataacggccttggatcgattcaagagccgtttg
aaagattaccaaacatattgcgaacatgttagaacgattccgcatttcaacgagttcccg
cagcatctgatagagtatatagaatacggattgcaaggacaggagccaccgtcgagacct
caaggcccagttcttccgaaaactttggcggctatgttggctccggtcacgactccttat
aagaccatgactacgactaccgtcacaaccagcactacacaagcgaaaccgtccacgact
ccgactacatctctttcggccagaccctctatgccttcggtcgctaatgcaactaatatc
gatacgttgctcgtggcgacagataaagaggaaaaaatcacgacgccgccagaagctttg
caggacaaaacggctttcattttcaataatctcagtcagttgaatctgcaacagaaatgt
gacgaaattcgcgagattgtcacggaggaatattggccgtggatggcgcaatatctagta
atgaaacgtgccagtatagagttgaattttcatgccttatactcgaattttttggattgt
atcaaattacctgaggtgaataaaatggtcacgagagagacatttcgaaatatcaaggtt
ctcttacgaagcgataagggaatagctaatttctcggatcggtcgctattaaagaattta
ggacattggctcggaatgttaacacttggcaggaataagcctattttgcagatagacata
gatttaaaaagtttactcgttgaagcatatcacaaagggcaacaagaactactttatgta
gtgccctttgtcgcgaaagtacttgagagttgtgcgaaaagtcgtgtctttcgtccaccc
aatccctggactatggcgattatgaatgttctagctgaattacatcaggaacctgatctg
aaattaaatttaaagtttgagatagaagtactttgcaagaatctgagcattgatgtcggg
gaactgaaaccagtcatttatctgaaagatccggaaaaattgcgtaatttagaatatcag
ttatcgcatccgaacaagaaatcggaaactactagcaatcaacaacaatctcaggggcct
atagaggaattggtcggaactacaacgagcggcggcgccgtcatcaatcctcaatccgcg
ccacccgcgaatacaacaccctcgttgccgaccggcggcgcgcctgaaccacgattcaat
tatatggatatatctgtaacaggcatcgccaatatttcgcagcacattactattaacaat
caattgcccctattccaaacacatcctcatctgaagcagtttgttcgcccagcagtcgaa
agagcgattcaagaatggattcatcctgttgtcgatagatctatcaagatagctcttaca
actagcgagcagatagtgaagaaagatttcgcattggatccggaagaactgcggatacgg
acggctggacgtaacatggtgcgcaatttaaccgctggcatggctatgatcacatgtcgc
gatcaaattctggcatccatcagcacgaatttaaaacaagccttgctcacggcattgatc
ggtacgactccacagcagaaggagcttgccgaacaagcggcgaatgtagttgccgctgat
aacatggaacttgcctgcgcattcgtacaaaagactgctatcgagaaagcgatacccgag
atggacaagcggctactgagcgagatggaattgcgaaaaattgctcggcaagaaggccga
cgatactgcgatcctctcgccaagtatcaagccgagaggatgccggagcagatccgattg
aaagtcggtggcgtgacgccacaacagatggccgtttatgaagaatttgccagaaatatt
ccaggattcctaccactctccgaacgggatacacaagtactcttcatgccgaaacctatc
aatgagactcccgtcaccacgttcacacctaattcggccgtggcagtcgctacggcgcaa
caagtagcggcttacgcggcggctgttagcaatgacgaggtgggcgctatgctggaaaaa
ctagccgcggaagcggaagttctgttggctgctgcgggacctgcggcgcctccgacgcag
catgctacctttcataatcttctggaaacgatcattctgaccagaagatcaagagacgcc
ggtgccgctatgacattattaaagaaagctgtcgaaggtttggtggatgggctaattctt
agtagcaatgtcatcgattcggagaatcttgtacaacgctaccgagaactgcacttgcgg
atcttgaaatgtcttcaggatccacgtgcgtacggtatgcaatggaccaataagcacgtg
actcgttgtctaaccgagtacagagaagaatttcgatataattttgaagccgtggattat
ctcataaggtctcatttgatcagtcttccacaattcgatgtagctctagcgcaagctatg
gaggcaggaagcgccatggcaacagcattcgccatgcaattggttcagctttatttgatt
gatgaaagacaagcgactcatgttaccgagactgatttatttcatacaattgaaatattg
gctcgaatggcacatcacagaacaccaccggaaggaatcttactctttagattaacgagt
ctagtagattcactgcgtgccaatcacgattctggtgtactggtggacagagctccagca
ggacctacggcacacattcattctggaatcctgcaggtgagagctcgcgattttgatgat
ccaccgggactaatggaaaagacggagtatctgttgcgcgaatgggtgcagatgcatcac
agtccgcagcacgcacgtgatcctaccaaagcgttcagcatatttgtgcatcagatgaac
atacacggaatcctcaagaccgacgacctaattacgagatttttcaagctaagcactcag
atgtgtgtcgatctctgctatcgcgctctctcggaaaccgcgacagctccctcgatcatg
cgtgcgaagtgctttcattcgttggacgcgtttgtacgtttggtagcactcttagtgaag
cattcgggcgacgccaccaacacccacaccaagatcaatctcttgaacaaagtgctcggt
atcgttgccggagtgctgctgcaagatcacgagatacgcggtaccgatttccagcaattg
ccgtatcacagaatcttcatcatgctcttcctagagctgtgcgcgccggaaccggtactg
gaggctgtcaactttcaagtattgacggccttctgtcacaccttgcatattctacgtccg
gcgaaggcatccggcttctgttacgcctggctggagttggtctcgcatcgagttttcata
ggacgtatgctcgccattacaccgcagcaaaaatgctggggtatgtatgcgcaacttctc
attgatttattcaagtacctcgcgccctatcttcgtaatgcggaactcgcgaagcccgtg
acaagcctttataagggcacactgcgggtgttgctggtactgttgcacgacttccccgaa
tttctctgcgactatcactacggattttgcgacgtgataccaccaaactgcatacaaatg
aggaatctgatattgagtgctttcccaagaaacatgcggctgcccgatccgtttacgccg
aatctaaaggtcgacatgcttcaagaaatagcgcacgccccgcgtgttctcaccaatttc
gcgtccacgatacagccgttgaccttcaagaaagaactcgactcttatttaaaagctcgc
gcgccggtcaccttcctgtccgagctgcgcagcaatctgcaagtgtcgcaagaagccggc
gtacgttacaacattcagttaatgaatgctctggtgctctacgtgggtacgcaggcaata
gcatttattcgcagcaagggccacgctcccaatatgtccaccatcgcgcactccgcacac
atggacatcttccagaatctggcggtcgatctcgacaccgagggtcgttacttgttcctg
aacgccattgcgaaccagctgcggtatcccaacagtcacacgcattatttcagctgtacg
cttctctacctgttcgccgaagcgaacacggaagcgatacaagagcagatcactagggtt
ctcctcgaaagactgattgttaacagaccacacccatggggtcttctcatcaccttcatc
gaattgatcaagaatccgacttataaattctggtcgcacgagtttgtacattgcgcgccg
gagattgaaaaattgtttgaatccgtagcgagatcgtgtatggtccagaaacaggtgcct
accacggagacggagatcccggagtga
DBGET
integrated database retrieval system
