Formica exsecta (narrow-headed ant): 115239523
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Entry
115239523 CDS
T07422
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
fex
Formica exsecta (narrow-headed ant)
Pathway
fex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115239523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fex03041
]
115239523
03009 Ribosome biogenesis [BR:
fex03009
]
115239523
Enzymes [BR:
fex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115239523
Spliceosome [BR:
fex03041
]
Complex A
U2 snRNP components
U2 related factors
115239523
Complex B
115239523
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
115239523
Ribosome biogenesis [BR:
fex03009
]
Eukaryotic type
90S particles
Helicases
115239523
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
SRP54
ResIII
AAA_30
T2SSE
Flavi_DEAD
AAA_7
ABC_tran
TsaE
AAA_16
ATPase
AAA_25
Motif
Other DBs
NCBI-GeneID:
115239523
NCBI-ProteinID:
XP_029669938
LinkDB
All DBs
Position
Unknown
AA seq
719 aa
AA seq
DB search
MSKRRIEVVDPYVKRKATDSSTSNNATTTASTVTKSQVQFNPYTMLPYTPKYYELYKKRI
TLPVFEYRADFVRLLSQHQCIVLVGETGSGKTTQIPQWCVEYSRSIGNKGVACTSPRRVA
AMSVAQRVSEEMDVALGQEVGYSIRFEDCSSPRTVLKYMTDGMLLREGMSDPMLDAYQVI
LLDEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTH
PVEIFYTPEPERDYLEAAIRTVIQIQMCEEIAGDLLLFLTGQEEIEEACKRIKREMDNLG
PEVGELKCIPLYSTLPPNLQQRIFEPAPPTKPNGAIGRKVVVSTNIAETSLTIDGVVFVI
DPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDN
TYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTD
LGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMKF
AHIDGDHLTLLNVYHSFKQHMDDVQWCYDNYVNYRSLKSGDNVRQQLSRIMDRFVLKRTS
TDFNSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQVVQLHPSSCLDHKPEWVIYN
EFVLTTKNYIRTVTDIKPDWLLMIAPQYYDLQNFPQCEAKRQLEMIQAKLDSKQYQEGF
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgtaggatcgaggttgtggacccttacgtcaaacgaaaagctacggatagc
tcaacatccaacaatgcgacgaccacagcatccacggtgacgaagagccaagtacaattc
aatccatacaccatgctgccatatacaccaaaatattatgagctttacaagaaaaggata
actctgcctgtatttgaatatcgtgctgattttgtgagattgttatctcagcatcaatgt
attgttcttgttggagagactggttccggtaaaactacacagataccacaatggtgcgta
gagtattcaaggagtattggaaacaaaggagttgcctgtacatcaccaagaagagtagca
gctatgagtgtagctcaaagagtttcagaagaaatggatgttgccttaggccaagaagta
ggatacagtatccgttttgaagattgtagttcaccaaggactgtgttgaagtatatgact
gatggtatgttacttcgtgaaggcatgtctgatcccatgttagatgcataccaagtgata
ttgctcgatgaagcacatgaaagaacattagctaccgacttgcttatgggtgttttgaaa
gaagtgatcaagcaaagaccagatttgaaacttgtgattatgagtgccactttggatgct
ggaaagtttcaacaatattttgacaatgcaccacttatgaacgtacctggtagaacgcat
ccagttgaaatattttatacaccggagccggaaagagattatttggaagctgcaattaga
actgtcattcaaatccaaatgtgcgaagaaattgccggagatctcctattatttttaact
ggtcaagaggagattgaagaagcttgcaagagaattaaaagagaaatggacaacttggga
cctgaagtcggtgaattaaagtgtataccgctgtattcgacgctgccgccgaatcttcag
cagagaatattcgaacctgctccgcctactaaacctaatggtgctataggtcgcaaagtc
gtagtctcgactaatattgctgaaacatcgttgactatcgatggtgttgtttttgtgata
gatcctggttttgccaagcaaaaagtatataaccccagaattcgtgtcgagtctctttta
gtatcgcctattagtaaggcttcggcacagcaacgagccggtcgtgctggcagaacaaga
cctggaaaatgttttagattgtacacagagaaggcatacaaaaatgaaatgcaggataat
acctatcctgagattttgcgttccaatcttgggagtgttgtattgcaattgaagaaactt
ggtatcgatgatctggtacatttcgattttatggatccacctgcacctgaaaccctcatg
agagctttggaacttctgaattatttggcagctcttgatgatgacgggaacttgacagat
cttggagcagtgatggcggaatttccattggatcctcaattggcaaaaatgcttatagct
tcttgcaatcataattgcagcaatgaaatactcagcattactgctatgctctcagtccca
cagtgctttgtgagaccaaacgaatcaaagaaggctgcggatgatgcaaaaatgaaattt
gcacatattgatggtgatcatttgacgttacttaatgtatatcattctttcaaacaacat
atggatgatgtccaatggtgttatgataattatgtcaattatcgatcattaaagagcgga
gataatgtaagacaacaattgagtagaataatggacagatttgtattaaaacgcacttca
accgacttcaattcgaaggattattacattaatatcaggaaagctcttgtaaatggattc
tttatgcaggtagcacatttagagagaacgggacattatctaactattaaggataatcaa
gtagtacagcttcatccaagcagttgtctggatcataaaccagagtgggttatttataat
gaatttgtgcttactactaaaaattatatcagaactgttactgatattaaacctgattgg
ctgctcatgatagcgccacaatattatgatctgcaaaatttccctcagtgtgaagcaaaa
cgacaactggaaatgattcaggcaaaactagattcaaagcagtatcaggagggcttctaa
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integrated database retrieval system
