Formica exsecta (narrow-headed ant): 115240620
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Entry
115240620 CDS
T07422
Name
(RefSeq) helicase SKI2W-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
fex
Formica exsecta (narrow-headed ant)
Pathway
fex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115240620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fex03019
]
115240620
Enzymes [BR:
fex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115240620
Messenger RNA biogenesis [BR:
fex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115240620
mRNA degradation factors
3'-5' decay
Ski complex
115240620
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Helicase_C
MTR4_beta-barrel
DEXQc_Suv3
ResIII
ATPase_2
DUF3067
DUF3516
Motif
Other DBs
NCBI-GeneID:
115240620
NCBI-ProteinID:
XP_029671735
LinkDB
All DBs
Position
Unknown
AA seq
1169 aa
AA seq
DB search
MNESSELHIGPPPIWPDIKLELREYIECPERLPIHQLNSAQCYWSRKPNVCSLLEFDLAP
IDTTLKFDRDPITGKIGEMQEIVLQGAGETARNSMSMTRAPGPLTDGVRGNPSNIPFWPG
GFEEPEVPENEFLNDIDFEKNLRTLAKGFSSGVEFKSDNCTSINCTKNETEVEEIKKSEE
LKIDNNINLMAVIHEEGNLLGLWSSIEEPKKENVQISDNNIPFTDISILPEETNIPVLKI
SEKQSEFAKTEWAEQLDVSAPITKAGKTTVAEYAIALSQKHMTRVIYTSPIKALSNQKYR
EFKRKFESVGLLTGDLQINQTASCLIMTTEILQSMLYCASDVLRDLEFVIFDEVHYINNE
DRGHVWEEIVILLPQTINIVMLSATVPNPIIFADWVGRIKKRKMYVISTLNRPIPLLHYL
YTGTDGKTKDDKFLVFDGNSQFLLDGWYKATNASDKKKNKNPKDSRRRIQMTPKQEEVLW
RAFISHLQKNDMLPVVVFTLSRKRCDMNAATLRNLDLTTAREKHQVHAFFHSNIKHLKGS
DRELPQVLMMQELLEKGVGIHHSGILPILREIVEMLFQSGVVKLLFATETFAMGVNMPAR
TVVFDSIRKYDGNNFRILHPTEYIQMAGRAGRRGHDTTGTVIVMCRYDVPHFNDLKPMMC
GEPQTLESKFKVTYSMLLNLRRVNESVTVEAMMRKSFKESPLASQEATYNSELRKIEREL
SNLPTLTEMQKKLSTFYHVAVDYLEDVKFLNPYLFESKKLAKALTEGRILLISYANHYNK
LGLLLQVMHYKSFTQYRVLILKDADASNSEAAEFKNLQIYEKWCEIISLTKKNIFVPSTN
TSHEVVTLYSWHILKITKCQIKVDCSLVQNDWEKRQISRFKNDPPGQTCQTAVQELISLS
FNAAANDQILCPYIELLSKNDFQLRVQHRDKLKAELNDMRCMEIPNFEEQFRPVFERNQL
EDKKRQLQLKLSDEGMALYPDYMNMVALLKHLRYIDSDERVGLKGRVALQMGSNELLITE
LILKNVLTVLQPAEIVALLSALIFQQRTDSEPTLTPNLANGCKIMSEVHAELERLEQQYQ
LSMIPSLNFGLVEVVYEWAQAKSFAEIMKMTDVQEGIIVRCIQQLGETLRDVKNAAVTIG
DPVLKEKMEEASTAIKRDIVFAASLYTQD
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaatcatcagagttacacattggtcctccaccgatttggcctgacatcaagtta
gaactacgggaatatatcgaatgccctgaacgattacctatacatcagctgaacagtgct
caatgttactggtcgcgtaaaccaaatgtttgttcgttattggagtttgatttggctcca
atcgatactacgctaaagtttgatcgcgatcctataacaggcaagattggcgaaatgcaa
gaaatcgtcttgcaaggcgcaggagaaacagcaagaaattctatgtctatgactcgtgca
cctggaccgcttacagatggagttcgaggtaatcctagtaatattcctttttggcctggt
ggttttgaagaacctgaagtacctgaaaatgaatttctaaacgatattgactttgaaaag
aatttgaggacattagccaaaggctttagttcgggtgtagaatttaaaagcgacaattgc
acatcgattaattgcacaaagaatgaaacagaagtcgaagaaattaaaaaatctgaagaa
ttaaaaattgacaataatatcaatttaatggctgttatacatgaggagggaaatttactt
ggtttatggtcttcaattgaggagccaaagaaagagaatgttcaaatttcggataacaac
attccatttacagacatttctattttgcctgaagagacgaatatacctgtcttgaaaata
tcagaaaaacaatcagagtttgcaaagacagaatgggcagagcaattggatgtgtctgca
ccaataactaaagcaggaaagactactgttgctgaatatgccattgcattgagtcaaaag
catatgacgagagtgatttatacatcccctataaaagcgctatcaaatcagaaatatcgc
gagtttaagagaaagtttgaaagcgttggattattaacaggtgatttgcaaataaatcaa
actgcttcatgcctaatcatgacgacagagattctacaatcaatgttgtattgtgcatct
gatgttttacgggatttagaatttgtcatatttgatgaagtgcattatataaataatgaa
gataggggtcacgtatgggaggaaatagtcattcttttaccacagacaatcaatatagta
atgttatctgcgactgtaccaaatccaataatattcgcagattgggtcggtcgtatcaag
aagcgaaaaatgtacgtgattagcactttgaataggccaatacctcttctacattactta
tacactggcactgatggtaagactaaagatgataagtttttggtctttgatggcaacagc
cagttcttattagatggatggtacaaagcgaccaatgcatccgataagaaaaagaataaa
aacccaaaggattctaggagaagaattcagatgactccaaaacaagaagaagtattatgg
agagcatttataagtcatctccagaaaaatgatatgttacctgttgttgtatttactttg
tcaagaaaacgttgtgatatgaatgctgctacactgagaaatctcgacttaacaaccgcg
agggagaaacatcaagtgcatgcattttttcactctaatataaaacatctgaaaggtagt
gatagagaattaccacaagtacttatgatgcaagagctcttggagaaaggtgtaggtata
catcatagtgggatactgccaattttgagagaaatcgtagaaatgttattccaaagtgga
gttgtaaagttactattcgcgacagaaacttttgccatgggagttaatatgccagctcgc
acggtggtatttgattccatacgaaagtacgacggaaacaactttcgtatcttacacccg
actgaatatatacaaatggctggtagagctggacggcgaggtcacgacacaacgggaaca
gttatagtgatgtgcaggtacgacgtaccgcactttaacgacttgaaacctatgatgtgc
ggcgagccgcagacattggagtcgaaattcaaagtcacgtactccatgctcttaaatttg
agaagggtgaatgaatccgtcaccgttgaagcgatgatgcgcaagtctttcaaggaatca
ccgctagcatcacaggaagcgacgtataacagcgagttacgaaaaatcgagcgagaatta
tcaaatctgccgactttgactgagatgcagaagaagctctctacgttttatcacgtggcg
gtcgattatctagaggacgttaaatttttaaatccttatttgttcgaatccaaaaaatta
gcgaaagctttaaccgaaggcagaatcttgctaatatcatatgcaaatcattacaacaaa
ttaggtctattactgcaagtcatgcattataaaagtttcacccaatacagagtgttgata
ctcaaggacgcggacgcatccaattccgaggctgctgaattcaagaatcttcaaatatat
gaaaaatggtgtgaaattattagtctaacgaaaaaaaatatatttgttccaagcactaat
acatcgcacgaggtcgtgactttatactcatggcatatactgaagataactaagtgtcag
ataaaagtcgattgctctttagtgcagaatgattgggaaaagaggcaaatctcacgattt
aaaaacgatccaccggggcagacgtgtcagacggcggttcaagaattaatttctctatca
tttaatgctgccgccaatgatcaaattctatgtccgtatatcgaacttttatcgaaaaat
gattttcaattaagagtacagcatagagacaaattaaaagctgaactcaacgacatgagg
tgcatggaaataccgaatttcgaagaacagtttagacctgtattcgaacgaaatcaactc
gaagataaaaaacggcagctccaacttaaacttagcgatgaaggaatggcgctgtatccg
gattatatgaatatggtggctctgctcaaacatttgagatatatagatagcgatgaaaga
gttggtttaaaaggaagagtcgcgctgcaaatgggtagtaacgagttgttgataacagag
ctgattctcaagaatgtgttaaccgttttacaaccagcggaaatagtagcgttgttatca
gcactaatctttcaacaacgtacagattcggaacctacactcacaccgaatctcgctaat
ggttgcaagataatgagcgaggtgcatgcggaattggaacgtttagagcagcaatatcaa
ttgtcgatgataccgtctttgaatttcggtttggtggaagttgtctacgaatgggcgcaa
gctaaatcgttcgcagagatcatgaaaatgacggacgtccaagaaggaattatagttcga
tgtatacaacaactcggcgaaaccttgcgagatgttaaaaatgcggccgtgactataggt
gatccggttttgaaagaaaagatggaggaagcttcgactgcaatcaaacgcgacatagtt
ttcgccgcatctttatatactcaagattag
DBGET
integrated database retrieval system
