Formica exsecta (narrow-headed ant): 115242534
Help
Entry
115242534 CDS
T07422
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC115242534
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
fex
Formica exsecta (narrow-headed ant)
Pathway
fex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115242534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fex03021
]
115242534
03019 Messenger RNA biogenesis [BR:
fex03019
]
115242534
Transcription machinery [BR:
fex03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115242534
Messenger RNA biogenesis [BR:
fex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115242534
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
115242534
NCBI-ProteinID:
XP_029674777
LinkDB
All DBs
Position
Unknown
AA seq
1908 aa
AA seq
DB search
MASTKSKEVADEYISSLSDLTINSKPLINMLTMLAEDNIEHASAIVQAVETHLQKVRSDI
KLPVLYLIDSIVKNVNGDYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPPK
KLFSLDVRVQSIDPAWPITAPPTNISSGSIHVNPRFFSTMPQQTTTSIVPPVKLPSGEPV
TTTEAAMREQLLKKQRELLELQKKKIELELLQAKASLEQQQRQLDKQAGSLKAEVVIPTA
HVPPTTEAAAQGKPVAPVIPNQTPKQVAKQFPAAAASLLKNAGANSGPRIAPASSIAVAS
AKPVSRDPRLKPTPAVQDVTTVPTIDPRQRPGTTSPKESRSEGQTQPVANTIVTSNQLKQ
QLPSKSAVTSTVNKPPASPAGSDNPTLLNVINNNHADTNLNNSNNKTFSGNINKDAVSHR
TSQKKDPRLTSNSSGNLNSSKIGQGLSVCNNSSSSILSASNRGSGGGDSNKSKDSKSSNS
LRGSSSSTADKSSTSSKSSHRKVGNKSRSKQPQICPSKIQKVDRDSSPVRSKSREKDNGD
SSPSSRTSPQSSFQASKNRKKNTKSRKRSPSPPYRIPRRNDIKSSSSLSSSGGVTEEEQS
GSLIVSPPHPPAFKEIRPNARQRNYVRRNKDDSLSPERSPASAGNAQIAAEPTLESSSKD
EDLRASLSLPGTTVSIPEKSDYNVCLVSGSNCKTIAEEDLDLRVLPPVNTSKRRSEDIES
SPAKKTKAEKFDALFGNEDVDLRTLTHPKAGRPPTPPPPVISGEDGKDSWAKLKTPPKNE
RDKQVNNADDKRERDRNRDRLGRLRLYNKLPDDPKERRRTLSNEEQDARSGRRGRENDKP
ERNDDRNIEIIMKQAAEQLNQGSITKTQYNTLIQEVLHMSEDRKLRAAQRKEKEGGTVIW
EKGINMDIVSGTGDRTATFSPSNDKEMIRNKEHPIPRNPNGPRWQNQPWQQPWAHPPGPP
YGGPQGHFNPDIRPIGPWQNPRHFGPMRPDYQYHGGFNHNMGPNPRLGPGMMGGPIGPNG
PIMSNLLPNGPMGPMGPMPNSPMAMGCHPAMMMNNGPMTNLMTNSNIPPLASGRNLSPNA
STKYDHDDNDQSYGGTTVKNSGSHSRELPPPDQKLLTEIARDTMKSINIDNIPREIRYYG
QTGVVFMNWDDPREIGFQDGIRRILIDDKDTITCAFNDQYKEFMYEGEIHRIKLGAPTRE
LYVDDRWYECYFGGMPITIELGGKTVSVKLEGPPPQVKIGTVKRTDLVVAKINLIINARN
MVPVFLDAKPQIFEIEGKPHTLEFTDALQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRF
SVLPRGVRAGHVKITGMKGESPTESPPTTAQKPKVDAAPTPSQLPVVEHESTSQDGSDFT
STSKPDLQLDILSSVLPSAMAPSSGLSYEAEPVENPPAPAPTLPLNMNELFQRLVETGIV
PSLMEQKKQEEEEKKESEISPVSFDKPETLKIKQPAIAAALYSGMQCSSCGARFAPELAT
RYSHHLDWHFRQNRRERDSARKAHSRPWYYDISDWIQFEEIEDLEDRVQSWFETEKQTAE
TEGMATDDTPQETLQPSVPTGSDEDSRCQVCHDAFEQFYNEEKEEWHLRPAVNYEKRNYH
PLCLEDYKEKSLVRALEKTALALEEAVSEIEEGKIECSEEKPGDEFKQEKSNVEMSNKEL
ELTENLEQIEESPLETATLETKEKPADIENSEITQDETEDKEKTEDAEESTVTADTEVNA
PMMNEEEKSPGEGVITPFENIKIKEEPLDDIGEEDNSEMFAFLDKLDHQIKEEPMDPEPE
PELDPEQIVNESGTVDTTYAAVKSSIDGNVELDSTPALVPAAPSRIKINITKPLNSNKES
EXVETPVEENAEQPLVPASIKPSLQGRKLSNLPPVEKGQELSGLCSIM
NT seq
5727 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgacaaagtccaaagaagttgcggatgagtacatctcgtccctgtccgatctt
acaatcaacagtaagccgcttatcaacatgctcaccatgttggccgaagataacattgaa
catgcatcagcgatagtgcaagctgttgagactcatctacaaaaggtgagaagtgacatc
aagttaccagtactctatctcatcgattcgattgtcaagaatgtaaatggagactatctg
aatctctttacgcaaaatatagtaaacacgttctgcggtgtgtttgagaaggtcgatgag
aacacaagagccagcatgtggaagttgcggcaaacgtggaacgatgtatttccaccgaaa
aaattattttcattagatgtgcgggtacaaagtatcgatcctgcatggccaatcactgcc
cctcctactaatatctcttcaggctccatacacgttaatccacgatttttttccacaatg
cctcaacaaactacgacatcaattgtcccgcctgttaaattgccatcaggggaaccagta
acaacaacagaagcagctatgcgagagcagttgctgaaaaagcaacgagaattgttagaa
ttgcaaaaaaagaagattgagctagaactgttgcaagctaaagcgagtttagagcaacag
caaaggcaacttgacaaacaagctggcagcttgaaggcagaagtggttatacccactgca
catgtccctccaactacagaggccgcggcacagggaaaacctgtagcacctgtaatacca
aatcaaacgccgaaacaagtagcaaaacaattccctgcagcagctgcgtcacttttaaag
aatgcaggagcaaacagcggtccacgaattgcaccagctagtagtatagcagtagcgtca
gctaagccagtctcacgagatccacgtttgaaacccactcctgctgttcaggatgtgaca
acagtaccaacaatagatccacgacaacgaccgggtacgaccagtccgaaagaatcacgg
agtgaaggtcaaacgcagccagtcgcaaatacaattgtaacctcaaaccaattaaagcag
cagttaccttcgaaatcggctgtaactagcactgtcaacaagcctccggcgagtcccgcc
ggttccgataatccgacgttattaaacgttattaataacaatcatgctgatacgaatctg
aacaatagtaataataaaacttttagtggtaatataaataaagatgctgtctcgcatcga
acaagtcaaaagaaagaccctcgattgactagtaatagtagtggtaacctaaacagctcc
aaaatcggtcaaggtttatcggtttgcaataatagttcgtcttcaatattgtcagcgagc
aatcgaggaagtggaggtggtgactccaacaagtcgaaagactcgaagagctcgaactcg
ttacgcggttcttcgtcttcgacagccgataaatcttccacttcctctaaatcctcgcat
aggaaagtagggaataagtcgcgatctaaacagccgcagatctgtccaagtaagattcag
aaagtcgacagagactctagtccagttaggtcaaaatctcgtgagaaagacaacggagac
agttcaccgtcctcacgtacttctccacaatcctccttccaagcctctaaaaaccgcaag
aagaatacaaaatccagaaaacgtagtccaagtcccccatatagaattcccaggcgtaat
gatataaaatcgagttcaagtttgagcagttctggtggtgttactgaggaggagcaatct
ggttcgctgatagtatctcctcctcatccaccagcattcaaagaaatcagaccgaatgct
agacagagaaattatgtaagacgaaataaagatgacagtcttagtccggaacgttcccca
gccagtgctggaaatgctcaaatcgctgccgagccaacattggaatcctctagtaaagat
gaagatctcagagcatcactgtctctacctggcactactgtttccatacccgaaaagagt
gactacaatgtttgcctcgtctctggtagcaattgcaagactatagcagaagaggattta
gatctacgagtattaccacctgttaacactagtaaaagacgcagcgaagatatagaatca
tctccagctaagaaaactaaggctgaaaagtttgatgcactatttggtaatgaagacgta
gatctgcgtacactgacccatcctaaagccggtcgtcctccgacgcctccaccgcccgta
atttccggggaggacgggaaagatagctgggcgaagttgaaaacgccaccaaaaaatgag
agagataagcaagttaacaacgccgatgataaacgcgagagggatcgtaacagggacaga
ctgggtcgtctcaggctctataacaagcttccggatgatcctaaagagagaagaagaaca
ttatcgaacgaagaacaagatgccagatcagggcgtcgaggtcgggagaatgataagcct
gagagaaacgacgatagaaatatcgaaattataatgaagcaagccgctgaacaattaaac
caaggatcgattactaaaacgcaatataacaccttgatacaggaagtgttgcacatgagc
gaggatcgaaaattgcgagccgcacagcgtaaagagaaagaaggtggcactgtaatatgg
gagaaaggtattaatatggatatcgtgtccggtaccggagatcgcactgcgacattcagt
ccgtccaacgacaaggagatgatacggaacaaggagcatccgataccgcgaaatcctaat
ggcccgagatggcagaatcagccgtggcaacaaccgtgggcacatccaccgggaccaccg
tatggcggaccgcaaggacactttaatccggacataagaccgattgggccttggcaaaat
ccgcgacactttggaccgatgagaccagattaccagtatcacggcggcttcaatcacaat
atgggacccaatccgcggttaggacccggtatgatgggtggtccgataggtcctaacggt
ccgatcatgtcgaatcttttgccaaacggtccgatgggaccgatgggacccatgccaaat
tctcctatggcaatgggatgtcatcccgcgatgatgatgaacaacgggccaatgacgaat
ctcatgacgaattcaaatataccacctttagcatctggtagaaatttatcgccgaacgca
tccactaaatacgaccacgatgataacgatcaaagttacggcggcacaacggtgaaaaac
tcgggatcgcatagtcgtgaattgccgccaccagatcaaaaattgttgaccgagatagcg
agagataccatgaaatccataaacatcgacaatataccgcgtgaaattcgatattacgga
cagacaggtgtagtgttcatgaattgggacgatccgcgagagatcggtttccaggacggc
ataagaagaatattaatcgacgacaaagacactattacatgtgcatttaacgaccaatac
aaggagtttatgtacgagggagaaatccatagaatcaaactaggtgcacctactcgtgaa
ttgtacgtcgacgatcgttggtacgagtgttacttcggcggtatgcccataacgatcgaa
ctcggcggtaaaacagttagtgtaaaactggagggtcctcctccacaagtcaagatcggt
accgtgaagagaacggatctcgtggtagcgaaaattaatcttatcatcaacgcgcgaaat
atggtgccagtatttttggacgcgaaaccgcaaatatttgaaattgagggaaaacctcat
acgctggaatttacagatgcgttgcaaacggttcttctgaatggacgaccgttcaaagtc
gaatttgggggattacctaagcctattattgtcagagacaaaaagcatttcatcaggttt
tcagtgttacccagaggcgtccgtgctggtcatgttaagatcactggaatgaaaggtgag
agtcctactgagtcgccaccaacgacggctcaaaaaccgaaagtggatgctgcacctaca
ccaagccaattgccggttgtagaacacgaatctacgtcacaagatggttcagatttcacc
tcgacttcaaaaccagatttgcaattagatatattgtcgtcagttttaccatcagcaatg
gcgccgtcatccggtttatcttatgaagccgaacccgtggaaaatccgccagcaccagca
ccgacattgccgctgaacatgaatgaattgttccaaagactggtcgaaactggcattgtt
cccagtctcatggaacaaaagaaacaggaggaagaagaaaagaaagaatccgaaattagt
ccagtctccttcgataaaccagagactcttaaaatcaaacaaccagctatcgccgcagca
ttgtacagcggtatgcaatgcagctcctgcggtgcaagatttgcacctgaattggctact
cgatatagccaccatttagattggcatttcagacaaaacaggcgcgaacgagactccgca
agaaaagcgcattctcggccatggtattacgatattagtgattggatacagttcgaagaa
attgaagatttggaggatagagttcaaagttggttcgagactgaaaaacagacggcggaa
acggaaggcatggctactgatgacacgcctcaggaaacattgcagcccagcgtaccgact
ggcagcgacgaagattcacgatgccaggtatgccacgacgcattcgaacagttttataac
gaggaaaaagaagagtggcatttgagaccagcagttaattatgaaaaaaggaattatcat
ccactctgtctggaagattacaaggaaaaaagtctagtgagagcattggaaaaaactgcc
ttggcacttgaggaggcagtctcggaaatcgaggaaggtaaaatagagtgttccgaagaa
aagcccggagatgaatttaaacaggagaaatccaatgtagaaatgtcgaataaggaactt
gaacttacggaaaatttagaacaaatagaagaaagtcccttagagactgctacattggaa
actaaagaaaaacctgctgatatagagaattctgaaattacgcaagacgaaacagaagat
aaagaaaagacggaagatgccgaagaaagtacagttacagcagacactgaggtaaacgcg
cctatgatgaatgaagaagagaaatctccgggcgaaggtgtaatcacaccgttcgaaaat
attaagattaaagaggagccattggacgacattggtgaagaagataatagcgaaatgttc
gctttcctggataaactggatcaccagattaaagaggaacctatggatcctgaacccgaa
cccgaactagatcccgaacaaattgtgaatgaatcgggtaccgtagatacgacatacgct
gcagtgaaaagttccattgatggaaatgtagaattagactcgacaccagcacttgtacca
gcagctccatcgcggattaagatcaatatcactaaaccacttaacagtaataaagaatcg
gaannggtcgagacgcctgtagaggaaaatgcggaacaaccgttagtaccagcttctatt
aaacccagtttacagggtagaaagctatcaaatttacctcctgtggagaaagggcaggag
ttgtcgggactctgctctattatgtaa
DBGET
integrated database retrieval system
