Formica exsecta (narrow-headed ant): 115243443
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Entry
115243443 CDS
T07422
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
fex
Formica exsecta (narrow-headed ant)
Pathway
fex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115243443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fex03041
]
115243443
Enzymes [BR:
fex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115243443
Spliceosome [BR:
fex03041
]
Complex C
Other components
Step II factors
115243443
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
AAA_30
SLFN-g3_helicase
T2SSE
AAA_16
ATPase
NB-ARC
PhoH
Sigma54_activat
AAA_7
Sigma54_activ_2
AAA_24
ABC_tran
cobW
AAA_23
Motif
Other DBs
NCBI-GeneID:
115243443
NCBI-ProteinID:
XP_029676315
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSDDSNLYRLDGTEGNQAGGLIIRKKASDHTFKKPSLLGLEKLAERKRREHSQEPTSSKS
DRYEGKDRRYRSYEEETPTHTGGVNSEAQRRLESRLKRQRLNVDDRGFRSSHRSRERDRD
RRRDRDRESRGRDSMRQTPLRFKDEPQTPKFRMKDPTSKSNWDDDEDEEPRRSSWDHPTP
NIYNKDGRDSIRSEFTPSYKYNPWNKDFKNSGITPMVDGEEKQLWEEEQQRLDREWYALD
DGENNAFANVSEEYTRKKEMELEARRQKRLSAQQRQINKDNELWERNRMLTSGVVSSLDH
DDDPDDEGEARVHLLVHNVVPPFLDGRIVFTKQPEPVVPVRDPTSDMALVARKGSALVKA
YREQKERRKAQKKHWELAGTHIGNIMGVHDRRKDDKEHAGQETDFKAGQKYARHIGAGEI
TGEAKHRSIQHQRRSLPVFAVRQELLNVIRENSVVIIVGETGSGKTTQLTQYLHEDGYSR
YGMIGCTQPRRVAAMSVAKRVSDEMATALGDKVGYAIRFEDCTSKDTIIKYMTDGILLRE
SLREGDLDRYSVVIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDCSKFSAFF
GNAATFQIPGRTYPVEVLHAKNPVEDYVDAAVKQVMQIHLQPKSGDVLVFMPGQEDIEVT
CEVLKERLAEIESAPSLSILPIYSQLPSDLQAKIFQKSEDGLRKCVVATNIAETSLTVDG
IVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRQGRAGRTGPGQCYRLYTRRQYLD
ELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSLYQLWILGALDHT
GRLTALGRQMAEFPLDPPQCQMLIVASQLNCTADILIIVSMLSVPSIFYRPKGREEDSDS
AREKFQVPESDHLTYLNVYNQWKANGYSSSWCNDHFIHAKAMRKVREVRSQLEEILKQQK
MDVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLHPTSALFGMGFTPDY
VVYHELVMTAKEYMQCVTAVDGHWLAELGPMFFSVKETGRSGRAKRRQAMQHLHEMEHQM
KEAEEEMKARAQEQLEREQASVRKKEILTPGIREPGTPAPYRNTPGRLGL
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgactcgaacttgtatagattagacggaactgaaggaaatcaagcaggaggc
ttgatcattcgtaagaaagcttcagatcatacttttaagaagccttctctgttaggcctc
gagaagcttgcagaacgaaaaagaagagaacattcgcaggaacctactagctcaaagtct
gacagatatgaaggaaaagacaggagatatcgatcttatgaagaagaaactcctactcac
actggtggtgtcaactctgaagcacaacggagattagaatcacgactcaaacgtcaaaga
ttaaatgtagatgatagaggctttagaagttcacacaggagtcgtgagagagatagagac
agacgaagagacagggacagggaaagtcggggtagagatagtatgaggcaaacgcctctt
agattcaaagatgaaccccagacacccaaattccgaatgaaagatcctacttctaagagt
aattgggatgacgacgaagatgaagaaccacgacgatcaagctgggatcatccaacaccg
aatatttataataaagatggtcgcgacagcatcagaagtgaatttactccttcctacaag
tacaatccttggaacaaagattttaagaattctggtatcactccaatggtagatggggaa
gaaaagcaattgtgggaggaagaacagcaaagattagatagagaatggtatgcattggat
gatggagagaacaatgcttttgccaacgtgtccgaggaatacacaagaaagaaggaaatg
gagctggaggccaggagacagaaacgcctttccgcacaacaacgacagataaataaggac
aatgaattgtgggagcgtaaccgtatgttaacatcgggagttgtgagctcgttggatcat
gacgacgatcccgatgacgagggtgaagcgagagttcacttgttggtccataacgtggtc
ccgccattcctggatggtcgcatcgtgttcacgaaacaaccagaaccagttgtacctgtg
cgcgatcccacttctgacatggccctggtagcgaggaaaggctcagcgctggtcaaggca
tatcgcgaacaaaaagaaagacgtaaagcacagaaaaagcattgggaattggctggaacg
cacattggtaacattatgggtgtacacgatcgacgtaaagacgacaaggagcatgcggga
caagaaacggattttaaagccggacagaaatacgcacggcacataggagcaggagagata
acgggggaagctaaacacagatcgattcagcatcaaagaagaagtctccccgtattcgca
gtacgccaagaattgctaaacgttatcagagagaatagcgtcgttataatagtaggtgaa
acaggtagcggtaagacgactcaattgacgcaatatcttcatgaagacggctacagtcgt
tatggtatgattggttgtactcagcctcgaagagttgctgctatgtctgttgcaaaaaga
gtgtctgatgaaatggcaactgctctaggcgacaaggtcggatatgcgatacgttttgaa
gattgtacttcgaaagatacaatcatcaaatatatgactgacggtattctactgagagaa
agtttaagagaaggagatttggatcgttatagtgttgttataatggacgaagctcatgaa
cggtcgctttccaccgatgtattattcggtcttcttagagaggttgtcgctagacggcat
gacttaaaattaatagtaacttccgcaacgatggattgcagcaagttctccgctttcttc
ggtaacgcggcaacatttcaaatacctggacgcacatatcccgtcgaggtgctgcatgcg
aagaatccagtggaggattacgtagatgcggctgtcaagcaagtaatgcagattcatttg
cagcctaagagcggcgacgtactggttttcatgcctggccaggaggacattgaagttact
tgcgaagttctgaaggaacgtttagctgaaatcgaatcagcaccttctctctccatactg
cccatttattcccaattgccgtcggatctgcaggcaaagatcttccaaaagtctgaggat
ggtcttcgcaaatgcgttgtggcaactaatatagcagaaacatcgctgacagtcgacgga
attgtttttgttgtcgattctggatactgtaaactgaaggtgtacaatcctcgaataggt
atggatgctctgcaagtatatcccgtatcgagagccaacgccgaccaacggcaagggaga
gctggtcgtaccggtcctggtcagtgctacagattgtacacgcggagacaatatttggat
gaattattattaactggagttcccgagatacaacgtacgaatttagctaatacggtgctc
ctgctgaaatcattgggagtacaggatctattagcgttccatttcatggatccgccgcca
caggataatatactgaactcgttgtatcagttgtggattttgggtgcgctcgatcacact
ggacgccttaccgctctcggccggcaaatggccgaatttcctttggatccgccacaatgc
cagatgctcatagtcgcctcacaactcaactgcaccgcggatatcctcattatcgtctcc
atgctgtcagttccatcaattttctatcgacccaagggacgcgaagaagattcggattcg
gcgcgtgaaaagtttcaagtaccggaatcagatcacctaacatatttaaacgtgtacaat
caatggaaggcaaatggttattcaagttcctggtgtaacgatcactttatacacgcgaag
gcgatgcgtaaggtgcgagaagtacggtcgcagctcgaggagattctgaaacaacaaaaa
atggacgtcgtcagttgcggtaccgactgggatatcgtgcgaaaatgcatctgctccgcc
tattttcatcaagcagcacgtttgaagggtatcggcgaatacgtcaactgtcgtactgga
atgccgtgccatcttcatcccacttccgcgctatttggcatgggctttacgcccgattac
gtcgtataccatgagctcgtgatgaccgctaaggaatacatgcaatgcgtcaccgcggta
gatggtcactggctggccgagttgggtcccatgttcttcagtgtgaaggagaccggtcgg
agcggtcgcgcgaaacgacggcaagcgatgcagcaccttcacgagatggagcatcaaatg
aaagaggccgaagaggagatgaaggcacgtgcccaggagcaactcgaacgcgaacaggcg
tcggtccggaagaaggaaatattaacgcctggcattagggaaccgggtacccccgctccc
tatcgcaacactcccggaagattaggattgtaa
DBGET
integrated database retrieval system
