Formica exsecta (narrow-headed ant): 115245728
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Entry
115245728 CDS
T07422
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
fex
Formica exsecta (narrow-headed ant)
Pathway
fex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115245728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fex03019
]
115245728
Enzymes [BR:
fex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
115245728
Messenger RNA biogenesis [BR:
fex03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115245728
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
FeoB_Cyto
DALR_1
Motif
Other DBs
NCBI-GeneID:
115245728
NCBI-ProteinID:
XP_029680037
LinkDB
All DBs
Position
Unknown
AA seq
572 aa
AA seq
DB search
MEVTCSNFQDVLSELDSILQNATFLSIDGEFTGLNSGPDAGPFDTPAQYYAKLRAGSMDF
LLVQFGLSIFTYDSQTDKYSQRSYNFYVFPKPMNRHAPDCRFMCQTSSIAFLANQDFNFN
KLFKYGIPYLRANEEEKLAKRLEEKQKIKEENNQDLIPISDNDKPQIEEICSRIEGFLAS
DAEEIIIDKCNAFIRRLVYQETRIRWPNKVRVESKVENTWHCLSIQKAGTKEEEKKKENQ
KRENEKLEMKQAVGFSNLLKKIVESGKIIVGHNMLLDLCHIVHQFFTPLPNDYLEFKTLI
HDLFPSLLDTKVICQSQQFKEHVTSSNLNVLLDIVSKSPFSIPDVEPVEGHSYSVSTEKS
HEAGYDAYITGLCFIALSNYLGTLQKSENAMVLANSPLLNPFLNKLPIARLKDFPYVNLV
GKDPNPSRDHVFHITFPKEWKHTDISQLFSPFGGGYVSWLSDTSAYIGLYRRDQAGIVMQ
ALARQTTCKVQKYSNHQVSLQTDVSLENRKRKLSSPENAAMKDNGKSTTNGANTHEDEWK
VATGKRRKKRKDQATTGDAVDKKTFAEDNSWN
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggaagtaacttgttccaactttcaggacgtattatctgaattagatagcatcctacag
aatgctacttttctcagtatcgatggtgaattcaccggccttaattcaggtccagatgct
ggtccctttgatacaccagctcaatattatgccaaactccgagcaggatcgatggatttt
ctgcttgtacagtttggtttgtccatcttcacatatgactcacaaactgataaatattct
cagcgttcttataatttttatgtgtttcccaaaccgatgaatcgtcacgcaccggattgc
aggtttatgtgtcagacatcttcgatagcctttctagcaaatcaagacttcaacttcaac
aaacttttcaagtatggcataccgtatctcagggcaaatgaagaagagaaacttgctaaa
cgcttggaagaaaaacaaaaaatcaaagaagagaacaatcaagacttgattccgatatca
gataatgacaaacctcaaatagaggaaatatgttccagaatagagggttttctggcctcg
gatgctgaagaaataataatagacaaatgtaatgcttttataagaagacttgtataccag
gagactagaattaggtggcccaacaaagtgagagttgaaagtaaagttgaaaatacttgg
cactgtctttccatacagaaagcaggtactaaagaggaagagaaaaaaaaagagaatcaa
aaacgcgagaacgagaaattggaaatgaaacaggctgtaggatttagcaatcttttgaag
aagattgtagaatctggaaagataatagtaggtcataacatgttactagatctgtgtcat
attgtgcatcaattttttacacctctgccaaatgattatctagaattcaagacattgatt
catgatttatttcctagcttattggatacaaaagtcatctgtcaatcacaacaatttaaa
gagcacgtaacatcgtcgaatttaaatgtattattagatatcgtcagcaagtccccattc
tctattcctgatgtggaacctgtggaaggacatagttattcagtatcaacagaaaaatct
catgaagcaggatatgatgcgtacattactggattatgctttattgcattatccaattat
cttggcacattgcagaagtctgaaaatgccatggtactagcaaattctcctttgcttaat
ccttttctcaataaacttccaattgcaagactgaaagactttccatatgtgaatttagta
ggaaaagatccaaatcctagcagagatcacgtgtttcacataacattccctaaggaatgg
aaacatacggatataagtcaactttttagtccatttggcggtggttatgtttcatggtta
tcggatacgtccgcatacataggtttataccgtcgcgatcaggccggcattgtgatgcag
gctttagccagacagactacctgcaaagtacaaaaatattcaaaccatcaagtctcctta
cagaccgacgtttctctcgagaaccgtaaacgcaaattgtcatcgcctgagaacgccgcc
atgaaagataatggaaaatcgactactaacggagcgaatacacacgaagacgagtggaaa
gttgctactggtaaaaggcgcaagaaacgcaaagatcaagcgacaacaggtgatgcagtc
gacaaaaagactttcgcggaagataattcttggaattag
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