Formica exsecta (narrow-headed ant): 115246028
Help
Entry
115246028 CDS
T07422
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
fex
Formica exsecta (narrow-headed ant)
Pathway
fex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115246028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fex03019
]
115246028
03041 Spliceosome [BR:
fex03041
]
115246028
03009 Ribosome biogenesis [BR:
fex03009
]
115246028
03016 Transfer RNA biogenesis [BR:
fex03016
]
115246028
Enzymes [BR:
fex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115246028
Messenger RNA biogenesis [BR:
fex03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
115246028
Spliceosome [BR:
fex03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
115246028
Complex C
U4/U6.U5 tri-SnRNP related factors
115246028
Ribosome biogenesis [BR:
fex03009
]
Eukaryotic type
Pre-60S particles
Helicases
115246028
Transfer RNA biogenesis [BR:
fex03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
115246028
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
Death_3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
115246028
NCBI-ProteinID:
XP_029680470
LinkDB
All DBs
Position
Unknown
AA seq
1009 aa
AA seq
DB search
MANFTEDLFDVFDEHGDDMEIPDISKKIELDAGIKRQLDTDDDKSLVKKLRHDPILDDIN
LEDVVCRIKVHNIETMESCMHEIAIPPEQEYIPLEHKQGKPAKEYKFILDPFQKEAILCI
ENNQSVLVSAHTSAGKTVVAEYAIACSLKDKQRVIYTTPIKALSNQKYREFHEEFKDVGL
VTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKERGVVWEETLI
LLPDNVHYVFLSATIPNARQFAEWVAHLHNQPCHVVSTDYRPTPLQHYIFPVGGDGIHLV
VDETGQFKEENFNRAMACLQNIGDAAKGDTKGRKGGLRATNSGQTNIFKMVKMIMERNFA
PVIIFSFSKKDCEIYAMQMAKLDLNTLEEKKLVDEVFNNAIDVLNDEDKKLPQVTNLLPL
LRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGK
DFRWITSGEYIQMSGRAGRRGLDDKGIVILMIDEQVSPVVGKAIVQGKPDPINSAFHLTY
NMVLNLLRVEEINPEYMLERSFFQFQNQAGIPVLYNKMKELYTTYNTVNVKRYDEISSYH
DIREQLDRLSGEFRSFLTQPDYLVPFLKSGRLVKVKNECETFDWGIIVNFKKKNPKNPIK
DKTIIVIDILLHISKNSKEGSPIPCREDEEGEMEVVPVLHNLISQISSLRLYYPKDLRPP
DNRKSVLKTIREVKRRFPDGLPLLNPITDMHIEDQAFKDIVKKIEALERRLYAHPLHKDP
DVNMLYEQFLHKEELAAQLKQAKEEFKQAKSILQMDELKCRKRVLRRMAYCTSADIIELK
GRVACELNGADELLMTEMIFNGLFNALSVPQMVALISCFVCDEKSNEMPKSTEELSGPLR
QMQDLARRIAKVSTEANLELDEDAYVDRFKPYLMDVIYAWCKGATFLQICKMTDIFEGSI
IRCMRRLEEVLRQLCQAAKGIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggcgaattttaccgaagatttatttgacgtctttgacgagcatggcgatgatatggaa
ataccggacatttcgaagaaaatcgaactggatgctggaataaagcgacaacttgacacg
gacgatgataagtcacttgttaaaaagttacggcatgatcctattctggatgacatcaac
ctagaagatgtggtatgccgaataaaagtacataatatagaaactatggaatcttgtatg
cacgaaattgctattcctcctgagcaagaatatatacctttagaacataaacagggtaaa
ccagccaaagaatataaatttatacttgatccgttccaaaaagaagcaattttatgcatt
gagaacaatcagtcggttcttgtttccgctcatacttcagctggtaaaactgtcgtagcc
gagtatgcgatagcatgttcgcttaaggataagcagagggtaatatatacaaccccaatt
aaggcattgagtaatcagaagtacagagaatttcatgaggaatttaaagatgttggtctg
gtaacaggtgatgttactataaatccaacagctagcgtattaattatgactaccgaaatt
ttgcgtaatatgctgtacagaggctcagaggtgatgcgcgaggttggttgggtgatcttc
gacgaaattcattacatgcgcgataaagagagaggcgtggtatgggaggagacgcttata
ctgttgccagataatgtacattacgtatttctctctgctaccataccgaacgcacgacaa
tttgcggagtgggtggcacacttgcacaatcagccttgtcatgtggtttctacagactac
agacctaccccattgcaacattatatatttccagttggcggcgatggtattcatctggtt
gtagatgagaccggtcaatttaaagaggaaaattttaacagagccatggcctgtttgcag
aatataggtgatgcggctaaaggtgacacgaaaggacgtaaaggtggcttgcgcgccacg
aacagtgggcaaacgaatatcttcaaaatggtaaaaatgatcatggagagaaatttcgcc
cccgtgataatcttcagtttttcaaagaaagactgcgagatttatgcgatgcaaatggcc
aaattagatttgaacacattagaagagaagaaattggtagatgaggtttttaataatgcg
atagatgtccttaacgacgaggacaaaaagttaccgcaagttacgaacttgctgccactt
ttgcggcgtggaataggtattcatcacggtgggctcttgccgattttaaaagagacagtc
gagatattattcggcgaaggtttgatcaaagcgcttttcgccactgaaacatttgcgatg
ggcttgaacatgcctgcacgaacagttctgtttacggcaccccgtaaatttgacggtaag
gactttcgttggattacatcgggtgaatatatccaaatgtccggccgtgcgggcaggcga
ggtctagatgacaaagggattgttatattaatgatagacgaacaagttagtccagttgtc
ggtaaagctattgttcaaggaaaaccagatccaatcaattctgcctttcatttgacttat
aatatggttcttaatcttctccgagtggaagagattaatccagaatatatgctggaaaga
agtttcttccagtttcaaaatcaagctggtattccggttttgtataataagatgaaggaa
ttatacactacctataatacagtgaatgtcaagagatatgatgagatttcttcttatcat
gatatacgcgaacaactcgatcggctgagcggagagtttcgatcatttttgacgcaacca
gattatttggttccatttttaaaatccggaagactagtaaaagtgaaaaacgagtgtgaa
acgttcgattggggcattatagttaactttaaaaagaaaaatccaaagaatccaataaaa
gataagactattattgtcattgatattttacttcacatctcgaaaaattctaaagaaggc
agtccaataccgtgtcgcgaagatgaagaaggcgaaatggaagtagttccagttttgcat
aatttaatttctcaaatcagttcactcaggctatattacccgaaagatctcagaccgcct
gataataggaagagtgtactgaaaacaatacgagaagtaaaaaggagattcccagatggt
cttccattactcaatcctattacggatatgcacatagaggaccaagcttttaaagatatt
gttaaaaaaattgaagcgctagaaagaagattgtatgcacatcctttgcacaaggatcct
gatgtgaatatgttatatgaacaatttttgcacaaggaggaattggctgcacagcttaag
caggccaaggaagaatttaagcaggctaagtctatacttcagatggatgaacttaaatgc
aggaaacgagttttaagaagaatggcatattgcacgtcggcggacattatagaactgaaa
ggacgtgtagcttgcgaactgaacggtgctgatgagctattaatgacagaaatgatcttc
aatggtctttttaatgctttaagcgtgccacagatggtggcattaataagttgttttgta
tgcgatgaaaaatcaaacgaaatgcctaaaagcacagaggaattaagcggtccactcaga
cagatgcaagatttagctcgaagaatagcgaaggtttcaacagaggccaacttggaatta
gacgaggatgcatatgttgacagatttaaaccatatttaatggatgttatatacgcttgg
tgcaaaggcgcaacgttcttacaaatttgcaaaatgacagatatatttgaaggatctatt
attaggtgtatgcgtcgcttagaagaagtgcttcgacaattgtgtcaagctgcaaagggt
attgggaatacagatctagaaaataaatttagtgaggcgatcaaacttataaaacgtgat
attgtgtttgcggcgtccttatatttatga
DBGET
integrated database retrieval system
