Formica exsecta (narrow-headed ant): 115246350
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Entry
115246350 CDS
T07422
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
fex
Formica exsecta (narrow-headed ant)
Pathway
fex03013
Nucleocytoplasmic transport
fex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115246350
03015 mRNA surveillance pathway
115246350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fex03019
]
115246350
Enzymes [BR:
fex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115246350
5.6.2.5 RNA 5'-3' helicase
115246350
Messenger RNA biogenesis [BR:
fex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115246350
mRNA cycle factors
Common to processing body (P body) and stress granule
115246350
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
NPHP3_N
ATPase
SRP54
nSTAND3
AAA_22
AAA_16
AAA_10
AAA_7
AAA
AAA_5
AAA_32
Motif
Other DBs
NCBI-GeneID:
115246350
NCBI-ProteinID:
XP_029680957
LinkDB
All DBs
Position
Unknown
AA seq
1121 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFDFTDFTLPSQSQTQASQHDATQTQSSQ
PVQVNGTNGTSSLDLKISGAAQSLAELQFEEEEEEAYYNRDLPEYACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCATRNVFVLGF
IPARADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLSWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFLLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQSALRKFAVDDTS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAVDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGTQVNGMQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNMPVPLGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGAAALV
RNKSGPRMGKLNSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFA
VGEFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtacggacccagcagccagaccctcacgtttctcgacaccgaggag
acggacctgatcggcgcggatactcagggcagcgaattcgacttcaccgatttcacgttg
ccgtcgcagagtcagacccaggcctcgcaacacgacgcgacccagacacagtccagtcaa
cccgttcaggtaaatggaacaaatggtacttcatcgttggatttaaaaatttctggagca
gcccaaagccttgccgagttgcaatttgaggaagaggaagaggaagcatattataatcgt
gatttacctgaatatgcatgtaaatattgcggtatccacgaggcatcatgcgtggttatg
tgtaatgtttgccgaaaatggttctgcaatggacgcggtaatacatcaggatcacatatt
atcaatcatcttgttcgtgctaaacacaaggaagttacgttacacagagatggccctctt
ggagaaactgttttggaatgttattcctgtgctacaagaaatgtttttgtattgggtttt
attcctgctagagctgattctgtagttgtgctgctttgtcgccaaccatgtgcggcacag
agttctttgaaagatatgaattgggatcaagagcaatggaaacctttgattgaagatcgt
agctttttatcttggctagtgaaaattccatctgaacaagagcagttgagagctagacag
atctcagcacagcagattaataaattggaggagttatggcgagacaacgtcgatgctact
ttccaagatcttgaaaagcctggagtagatgaggaaccgcagcaagttttgttacgctat
gaggatggttatcagtatcaaaatatttttggtccgcttgtaaaattggaagctgattat
gacaaacggttaaaagaatctcaaactcaagagaatattgaagtacggtgggatgttgga
ttaaataagaagactattgcatactttttgctagctaaaacggatggtgatatgaaattg
atgcatggagacgaattgagactccgttacttgggagaacttcataaaccttggtccgga
attggacacgtgattaagatcccggataattacggggaagaagtcggaattgaattgaaa
aataattctggagcgccaacagaatgcgtcagtaacttcgttgttgatttcatttggaag
agtacgagttttgatagaatgcagtctgcattacgcaagtttgctgttgatgacacatcc
gtatcggcttacatatatcatagactactaggtcatgaagtagaagaagttttgttccgt
tgtcatctccctaagcactttagtgcgccaaatttacccgatttgaatagatcgcaggtg
tacgctgtaaaacatgcaatacaacgacccttgtctttgattcaaggaccacctggaaca
ggtaaaaccgtaacgagtgctaccatagtttatcaattggtaaaacaaaacggtggtcca
gttcttgtatgcgctccttccaatactgctgtcgatcaattaaccgagaagatacataaa
tcaaatctgaaagtcgtacgattatgtgccaaatcacgagaggccattgattcgccggtg
agtttcctcgcattgcataatcagataaaaaacatggagacgaatactgaattgcaaaag
ttacaacaattgaaggacgagactggcgaactttcaagcgttgatgaaaaacgttataga
ctcttgaagaaagcggcggaaaaggagcttctggaagcagcagatgtaatttgctgcaca
tgcgtaggcgctggtgatcctagattgcatcgattaaagtttcattctatacttatcgat
gagagtatgcaggctaccgaaccggagtgcatggtgcctgtcgttttaggagcgaagcaa
ttgatccttgttggtgatcactgtcaattgggtccagtggtgatgtgtaaaaaagccgcc
agagctggtttgtcacaatctctgtttgaaagactggtggtgttgggaattagacctttc
cgtttggaagtacaatatcgtatgcatcctgatctttcgcgattcccatctaattttttc
tacgaaggttccctgcagaatggcgtttgcgctgacgagagaaaattattaaagattgat
tttccctggcctgcagtagacaaaccaatgttcttttatgtcacgcaaggtcaagaagag
atagccggaagcggaacatcctatttgaatcgtaccgaagcgtctaatgtggaaaaaata
acgacgcgattcttacgttgtggtgtaaagccggaacagatcggagtgataaccccatac
gaaggtcagcgggcttatcttgtgcaatacatgcagtatcaaggttctctgcattcgaaa
ctgtatcaggaaattgaagtagcaagtgtggacgcttttcagggacgcgagaaagatata
ataataatgtcttgcgtacgatccaatgaacatcagggtattgggttcttgaatgatccc
cgaagattaaatgtggcgctgactcgcgcgaaatacggtatcatcattgtagggaaccct
aaggtactttcgaaacagccactctggaaccatctgctcagcttttacaaggagcaaaag
gtgctggtcgaaggaccgttgaacaatctaaaggaatccatgatccaatttgctaaacca
aaaaaactcgtgaacgcggccaacccaggttcgcatttcatgtccacgtcaatgtacgat
gctcgcgaagccttgattcctggatcagtatacgatcgctctggcacgcaggtgaacggc
atgcagaatcataatccatactatcagagaaacgtgccgctcgacattttcagtcgcacc
cacgataccatcagctacatcagcccggaacgggcgcaggcggcgatgaacaacatgccg
gtaccgctgggtatgttcatgaacatggcgcacgtgccgccacgcttttataatcaacat
caacaggcgttgcaggcgcgtcagaatcaaagaaatcgacgtggtgccgctgctttggta
agaaacaagtccggtccgcgtatgggtaagctgaatagtcaaacagaacaaaatacgcaa
ccgtatagccaaccgggtctgccgctgacccagggtacgacgcagggtatgtctcagccc
ggcttcagtctctcgcagcctggtctcagtcaagcggagctctctcaggattcgttcgcc
gttggtgaattccagtcccaaatggacggtctgctgtcgcaagactcaacctatcagggc
gatcgaagtggtttctatcaatcgggccaatcgcaagccggaggacaattctcgcaaccc
tactga
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integrated database retrieval system
