Flavobacterium faecale: FFWV33_05875
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Entry
FFWV33_05875 CDS
T05515
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ffa
Flavobacterium faecale
Pathway
ffa03410
Base excision repair
ffa03430
Mismatch repair
ffa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ffa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FFWV33_05875
03430 Mismatch repair
FFWV33_05875
03440 Homologous recombination
FFWV33_05875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ffa03400
]
FFWV33_05875
DNA repair and recombination proteins [BR:
ffa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FFWV33_05875
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FFWV33_05875
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FFWV33_05875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
LsmAD
Motif
Other DBs
NCBI-ProteinID:
AWG21094
UniProt:
A0A2S1LBK2
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All DBs
Position
complement(1337968..1339656)
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AA seq
562 aa
AA seq
DB search
MRWTIKPKPSAEKIQHLAHALQVEDFVATLLVQRGIETFEDAKAFFRPSLSHLHDPYLMK
DMDKAVIRIEKAIANNERILVFGDYDVDGTTAVSLVASYLKTYYSNVDTYIPDRYLEGYG
VSFKGIDYAEDNEFSLIIALDCGIKSIDHVNYAKERNIDFIICDHHRPGDQLPAAVAVLD
PKRSDCTYPYDELCGCGVGFKLIQALGTNRDQTIEDLIPYLDLVATAIAADIVPMTGENR
VMAYFGLKVINDSPRPGIKALVHQVKKQTLDITDVVFIVAPRINAAGRIRHGNYAVQLLT
EFDFEQAQAFASEIEKNNADRKELDQQITKEALNQIITNQEEDRFSTVVFQEDWHKGVIG
IVASRLIETHYRPTLVFTKSGEKYAASARSVKGFDVYNALEACADHLEQFGGHMYAAGMT
LQAENYPAFKNAFEKQVQATILPEQRVPEIEVDAEIDFNDISPKFIRILKQFEPFGPQNM
TPVFMSKNVIETGYAKPMGKENEHLRLFVKQNQSEGLAAIGFGLGNKLEIVTNQKPFEAA
YCIDENEWNGKTTTQLRLKDIR
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggacaataaaacccaaaccatcagcagagaaaattcaacatctggctcatgcc
ttacaagtggaggattttgtagctaccttattggtgcagcgtggcattgaaacgtttgag
gacgcaaaggctttctttcgaccatcactctcccacttgcacgatccttatttgatgaaa
gatatggataaggctgttattcgaatagaaaaagcaattgccaacaacgaacgcatcttg
gtttttggtgattatgatgttgatggtaccacagcagtgtcactagtagcttcgtactta
aaaacgtactactccaatgtggacacctatattccggatcgctatcttgagggatatggc
gtgtcgttcaaaggaatcgattatgccgaggacaatgagttctccttaattattgctttg
gattgcgggatcaagtctattgatcatgtgaactatgccaaggaacgaaatattgacttt
attatatgtgaccaccacagacctggcgaccaactgcccgctgccgtggcggtacttgac
cccaaacgcagcgattgcacgtacccgtatgatgaactgtgcggatgcggtgtggggttt
aaactcatccaagctttgggcacaaatagagatcaaactattgaagatttgattccgtac
ttggacttggtagctactgctattgctgccgatattgtaccaatgacaggagaaaatcga
gtgatggcttactttggattaaaggttataaatgatagtccaagacccggaatcaaagct
ttggttcatcaagtaaaaaagcaaacactcgatattactgatgttgtttttattgtagca
ccaaggattaatgccgcaggtcgcatacgacatggtaattatgctgtgcagttgttgacc
gaatttgattttgagcaagcgcaagcatttgcatctgaaatcgaaaaaaacaatgctgat
cgcaaagaattagaccaacaaattactaaagaagccctcaatcaaattattactaaccag
gaagaagaccgcttttctactgtagtttttcaagaagattggcacaaaggcgtgatcgga
attgtagcgtcaagattaatcgagacgcactatagaccaaccttagtgtttaccaagagt
ggcgaaaaatatgccgcatcggcccgatctgtaaaaggatttgatgtgtataatgctctc
gaagcttgcgcagaccacctcgagcaatttggtgggcacatgtatgcggccggaatgaca
ctgcaagccgagaactatcctgcttttaaaaatgcgttcgagaaacaagtgcaagcaact
attttgcccgaacaacgcgttccagaaattgaagtggatgcagaaattgatttcaacgat
ataagtccaaaattcattcggatactaaaacaatttgagccttttggtccgcaaaatatg
acgcctgttttcatgagcaaaaatgtaattgaaacaggctacgcaaaaccaatgggaaaa
gagaatgagcacctcagactttttgtcaagcaaaatcaatctgaaggcttggctgcgatt
ggatttggattgggaaataaattggaaattgttaccaaccaaaaaccttttgaagccgct
tactgcatcgacgagaacgaatggaacggcaaaacaactacacaattacgattaaaagac
attagataa
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