Fusarium falciforme: NCS54_00111000
Help
Entry
NCS54_00111000 CDS
T09198
Name
(RefSeq) SYMPK-PTA1-N domain-containing protein
KO
K06100
symplekin
Organism
ffc
Fusarium falciforme
Pathway
ffc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ffc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
NCS54_00111000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ffc03021
]
NCS54_00111000
03019 Messenger RNA biogenesis [BR:
ffc03019
]
NCS54_00111000
Transcription machinery [BR:
ffc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
NCS54_00111000
Messenger RNA biogenesis [BR:
ffc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
NCS54_00111000
U7-dependent histone pre-mRNA processing factors
NCS54_00111000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
77787059
NCBI-ProteinID:
XP_053002719
LinkDB
All DBs
Position
1:complement(join(3949968..3950092,3950143..3951545,3951604..3951731,3951785..3951950,3952005..3952339))
Genome browser
AA seq
718 aa
AA seq
DB search
MAANLSVSDQIRQLNDARKLVLGDVKYYPSIVRGILPIIGPNAAIELRRWGAEFLAEAFA
TPALPNGEKETMQPYVLATLESMMENDREDPQVIRSVIQCAASIYPLALRWIINNSYDTI
TWQRMVAIKQKILRIWDNAAPSVRICCIKFAQRVVLAQSVASGAELRYGGTLDVSLDKVP
PGHQSLDPRNLEAEASGLLDRMLIVLQESSDALVVDATLNCLSILVRTRPATSNRVVNAL
LNFNPLKLANSPLTPKTRVMMKSMEKTSRLLLIHLMKRDPHNPMTPRIQQHVERMMRTMA
EIFDDSGRKRPLAAQHHDGYDAKRQRLTPAQIQVPPLGPGTHSLADVFTLIDNDALRNFD
IFQVPAPMVAKIAVTTLASIDQQVLAKAVDGIRGRLDALASAPAPELNPNTAPLGVDEDD
DDYEPDFYQAEDTEQILNKLDSAPVHDASSGLEDSLALKSFHLHQPQALTPETALTAGNG
TVTRVIEMMKSLEDPSKKSKAGFNRLAASSGNRDSWMTILARLATRSVAGLEGVSVKDEG
DPSAPQSLSSNIRDVLYAYVMEDFRKHIDVAVSWLCEEWYNDKLQQKTGGDRLLHYEKCC
LRLIDGFLPYLNAQDKVLTRFLSEIPELNRNILSRVKHMCRDPSIVQLALTSLLYLVMMR
PPIKEIALDTVQDIWIEFEEARPMAGKYLSKYRPAFMEAGREAAGDNAGQATAPAIAA
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgaatctgtcagtgtcggaccagatccggcagctcaacgatgcccgaaagctc
gtcctgggagacgtcaaatactatccaagcatcgtcagaggaattctccccatcattgga
ccgaacgcggcgatcgaacttcgacgatggggcgccgaattcctcgccgaggcctttgcg
acgccagcgctgccgaacggagagaaggagacgatgcagccctacgtactggcgacacta
gaatcgatgatggagaatgatcgagaagacccccaagtcatccggagcgtgatccagtgc
gctgccagcatctatccgctagcgttgaggtggatcataaataacagctacgatacgatt
acgtggcagagaatggtggcaatcaagcagaagattttacggatatgggacaacgcagcc
ccttccgtgaggatctgctgcataaagtttgcgcaacgtgtggttttggctcagagtgtc
gcttctggtgctgagctcagatatggtggcactctcgatgtctccttggataaagtcccc
ccgggccaccagtcccttgacccccggaatttggaggcagaagcatcagggctcctggac
cgaatgcttatagtgcttcaagagagcagtgatgcattggtcgtagatgcgacactcaat
tgcttgtctattctcgtgagaacgcgcccggcaacctcgaatcgagttgtcaatgctctt
ctcaacttcaaccccctcaagctcgcaaactcacccctcacacccaaaactcgcgtcatg
atgaaatcgatggagaagacaagtcgactgctcttgatccacctgatgaagcgagatcct
cacaaccccatgacgcccaggattcagcagcacgtagagcgtatgatgcgcaccatggct
gagatattcgacgactcgggaaggaaacggcctctcgcggcccagcaccatgacggatat
gacgctaaacgacaacggctgactcccgcccagatccaggtgcccccgttgggtcctggc
acgcacagcctggcagatgtgttcacattgatcgataatgacgctctaaggaactttgac
atcttccaggtccctgcaccaatggtggccaagatcgcagtcacgacgcttgcgagtatc
gatcagcaagtgttggccaaggcggttgatggtatccgtggacgtctagacgcccttgcc
agtgccccggctcccgaactgaaccccaataccgccccgctgggcgtggatgaggatgac
gacgactacgagcccgacttttatcaggctgaggatacagaacaaatcctcaacaagcta
gatagcgctcctgtccacgatgcgtcatcaggtctagaggacagccttgctttgaagtcg
ttccaccttcaccaaccccaggcactgacaccagaaacggctctaacagcgggtaacggg
actgtgacgcgggtgattgagatgatgaaatctttagaggatccatcaaagaagagcaag
gctggcttcaataggctagctgccagctctggaaaccgagactcgtggatgacgatactg
gcacgactggcgacgcggtcagtggctggcctcgagggagtatctgtgaaggacgagggt
gacccatcagcaccgcaatccctcagcagtaacatccgcgacgtgctctatgcctacgtg
atggaggacttccgaaaacacatcgacgtggcagtttcgtggctgtgtgaagagtggtac
aacgacaagctacagcagaagacaggcggtgatcgactgctgcactacgaaaagtgctgc
ctgcggctgattgatggattcttgccatatctgaacgcccaggacaaggtgctcacgcga
ttcctgagcgagattccggagctgaaccggaatattctatctcgggtgaagcacatgtgt
cgcgatcccagcattgtgcagttggccctaacaagcctgctctacttggtcatgatgcga
ccgcctatcaaggaaattgctctggatacggtgcaagacatatggatcgagttcgaggag
gcgaggcctatggcgggcaagtatctgtccaagtatcggcctgctttcatggaggcagga
cgggaggcagctggcgacaatgctgggcaggcgacagcaccagccatcgcagcttga
DBGET
integrated database retrieval system
