KEGG   Fusarium falciforme: NCS54_00123500
Entry
NCS54_00123500    CDS       T09198                                 
Name
(RefSeq) Endoribonuclease YSH1
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ffc  Fusarium falciforme
Pathway
ffc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ffc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    NCS54_00123500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ffc03021]
    NCS54_00123500
   03019 Messenger RNA biogenesis [BR:ffc03019]
    NCS54_00123500
Transcription machinery [BR:ffc03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     NCS54_00123500
Messenger RNA biogenesis [BR:ffc03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     NCS54_00123500
    U7-dependent histone pre-mRNA processing factors
     NCS54_00123500
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B_6 Lactamase_B Anti-Pycsar_Apyc1 RMMBL Lactamase_B_2 Lactamase_B_3
Other DBs
NCBI-GeneID: 77787184
NCBI-ProteinID: XP_053002841
LinkDB
Position
1:complement(join(4387021..4388121,4388175..4389306,4389587..4389684,4389737..4389889))
AA seq 827 aa
MASKRKASAMNAAAAEEPVDPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAY
DGLAALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLI
QDSVRVGNTSSNPTSQPVYTEQDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAM
FLIEIGGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALM
KSITSILNRGGRVLMPVFALGRAQELLLILDEYWGKHADFQKYPIYYASNLARKCMLVYQ
TYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDFKYIRSLKNLDRFDDVGGCVMLASP
GMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQITQEPDQIQAVMSRSMAGARRMP
GGDGEKVLIPRRCSVQEYSFAAHVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLLS
LNANKTVKVKVYSPRNCEELRIPFKADKTAKVVGKLASIQPPQNIHLDPATAPPLVTGVL
VQNDFKLSLMAPEDLREYAGLNTTTITCKQRLTLSAAGIDLVKWALEGTFGTIEELPEMR
RAKNGTNGDAAITDGETHPEEADEEVASLVAAYLVMGCVSVRYRTNGEVELEWEGNMLND
GIADSVMAVLFSVESSPAAVKRSSAKHSHSHELPAANPHHSATPEERLERLLWFLEAQFG
QDNVAPVATPKLPPTPKEEAPEGKVKDEDAMEEDGDEDSQLEERQRKEIERLHKIGIPVP
GVSIKVDRLTATVWLEDLEVECNNKVFADRVRAVVERAVEVTAPLWG
NT seq 2484 nt   +upstreamnt  +downstreamnt
atggcatccaaacgaaaggcatcggcgatgaacgcggccgcagcggaggagcccgtagac
ccttcagacgagctcatgttcctctgtttgggaggcggtaacgaagtcggtcggtcatgt
cacattatccagtacaagggaaagacggtcatgcttgacgccggccagcaccctgcgtac
gatgggctcgcagccctccccttctatgacgacttcgatctcagcaccgtcgatgtgctc
ctaatcagccattttcacattgaccatgcggcgtctttgccgtatgtgctcgcaaagacc
aacttcagagggcgtgtattcatgacgcatcctaccaaggccatctacaaatggcttatc
caggacagtgtccgagtgggcaacacatcgtcaaatccaacctcgcagcccgtctacacg
gagcaggaccatctcaacacatttccgcagattgaggctatcgactatcacacaactcat
accatctcctccatcagaatcacaccctacccagcaggccatgtgctcggcgcggccatg
ttcctcatcgagattggtgggctcaacatcttcttcactggagactactcgcgagagcaa
gatcgacatctggtttcggcagaggttcctaagggcgtcaagattgatgttctcatcacc
gagtcgacgtatggcattgcctctcacgttcctcgcctggagagagaacaggcgctcatg
aagtccatcacaagcatcctaaaccgaggtggccgtgttctcatgcccgtcttcgccctg
ggacgtgcccaagagcttctgttgattctcgacgagtattggggcaagcatgctgacttc
caaaaataccccatctactacgccagtaacctggcgagaaagtgtatgcttgtgtaccag
acttatgtcggcgccatgaacgacaatatcaagcgtcttttccgtgagcgtatggccgag
gccgaggcttctggggatggtgctggcaagggtgggccttgggactttaagtatattcgc
tctctgaagaacctcgaccgattcgacgacgtcggtggctgtgtcatgcttgccagtcct
ggtatgctgcagaacggtgtcagccgagagctgctagagcgctgggcccctagcgagaag
aacggtgtgatcattactggttacagtgtcgagggcaccatggccaagcagatcacgcag
gaaccagatcagatccaggccgtcatgtctcgcagcatggctggcgctcgtcgaatgcct
ggaggcgacggcgagaaggttctcattcctcgaaggtgcagcgttcaagaatactctttt
gctgcccacgttgatggtgtcgagaaccgcgagtttattgaagaggttgcagcgcctgtg
gttattctcgtccatggcgaacagcacaacatgatgcgtctcaagtcaaagcttctttcg
ctcaacgcaaacaagacggtaaaggtcaaggtctactctcctcgcaactgcgaagaactt
cgcatccccttcaaggccgacaagactgccaaggtcgtcggcaagctcgcctccatccag
ccgccccaaaacatacaccttgatcctgctaccgcgcctcctcttgtcaccggagtactt
gtgcagaacgacttcaagctttcactcatggcccccgaggatctgcgcgagtacgctggt
ctcaacaccactaccatcacctgcaagcagcgtctgacccttagcgctgcgggcatcgac
ctggttaagtgggctcttgagggcacattcggtactattgaggagctgccagagatgcgc
cgtgccaagaacggcaccaacggtgatgcggccatcaccgacggtgagactcacccggag
gaggcagatgaagaggtagccagcctcgtcgcggcgtatctggtgatgggttgcgtttct
gtacgataccgcacaaacggtgaggtcgagctcgaatgggagggcaacatgctcaacgac
ggcatcgccgactctgtcatggccgtcctcttctccgtcgagagctcacctgccgccgtc
aagcgttcctcggccaagcactctcactcgcacgagctccctgccgcaaaccctcaccac
tctgcaacccctgaggagcgcctcgagcgtctgctgtggttcctagaggcacagttcggc
caggacaacgtcgcccccgtcgcaactcccaagctgccccctactcccaaggaggaggcg
cccgagggcaaggttaaggatgaggacgccatggaggaggatggcgatgaggattcgcag
ctcgaggagagacagcgcaaggagattgagagactacacaagattggcattcccgtgccc
ggagtatcgatcaaggtggatagattgaccgccactgtgtggctggaggacctcgaggtc
gagtgtaacaacaaagtcttcgccgacagagtcagggctgtcgtcgagcgggctgtcgag
gtgacggcgcctctctggggttga

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