Fusarium falciforme: NCS54_00417900
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Entry
NCS54_00417900 CDS
T09198
Name
(RefSeq) Hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ffc
Fusarium falciforme
Pathway
ffc03013
Nucleocytoplasmic transport
ffc03015
mRNA surveillance pathway
ffc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ffc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NCS54_00417900
09122 Translation
03013 Nucleocytoplasmic transport
NCS54_00417900
03015 mRNA surveillance pathway
NCS54_00417900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffc03019
]
NCS54_00417900
03041 Spliceosome [BR:
ffc03041
]
NCS54_00417900
Enzymes [BR:
ffc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCS54_00417900
Messenger RNA biogenesis [BR:
ffc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
NCS54_00417900
Spliceosome [BR:
ffc03041
]
Complex C
Other components
EJC/TREX
NCS54_00417900
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
NCS54_00417900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
CMS1
DUF6066
Motif
Other DBs
NCBI-GeneID:
77790128
NCBI-ProteinID:
XP_053005701
LinkDB
All DBs
Position
3:join(2859351..2859576,2860116..2860526,2860576..2860936,2860986..2861243,2861294..2861342)
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AA seq
434 aa
AA seq
DB search
MSHEEDLIDYSDEEIGGNETAATTSNGKKGELAAGNNVDKKGSYVGIHSTGFRDFLLKAE
LLRAIADCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVS
VVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGIPIKTDVETLKNKETCPHIIVGTP
GRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPQQKQVMMFSATLSE
EVKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEKEKNRKLNELLDDLQFNQVIIF
VRSTVRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFKKRICVATDVFGRGIDI
ERINLAINYDLSNDASSYLHRVGRAGRFGTKGLAISFVSTDQDQEVLKEIEKRFEVALPE
FPKEGVDASTYMAS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaggaagatctcatcgactactccgatgaggagatcggcggcaacgagacc
gccgccaccacctcgaacggcaagaagggcgagctcgccgccggcaacaatgtcgacaag
aagggcagctacgtcggtattcactcgaccggtttccgcgacttcctgctcaaggccgag
ctcctccgcgccattgccgactgcggtttcgaacatccatcggaggtccaacaaacttgt
atccctcaggctcttctcggcggtgacatcatctgccaagccaagtccggtctgggaaag
acggccgtctttgtcctcgcgacccttcagcaggtcgagcctgtgaacggagaggtctcg
gtcgttgtcatgtgccacacccgtgagctggcctaccagattcgggacgagtacaaccgc
ttcagcaagtacatgcctgacatcaagactggtgtgttctatggcggtatccccatcaag
acggatgtcgagaccttgaagaacaaggagacttgccctcacattattgtcggcactcct
ggtcgtcttaaggcccttgtccgtgacaaggctctgcgccttggcagcgtccgcattttc
gttctcgatgagtgcgacaagatgcttgaccagcctgacatgcgtaccgatgttcaggat
gtgttccgcgccactcctcagcagaagcaggtcatgatgttctccgctactctgtccgag
gaggtcaagcccatctgccgaaagttcatgcagaaccctaccgagcactacgtcgacgag
gacaccaagctcaccctccacggtctccagcagtactacatcaagctggaggagaaggag
aagaaccgcaagctcaacgagctcctggatgatctgcagttcaaccaggtcatcattttc
gtccgcagcaccgtccgtgctaccgagcttgacaagctactccgggaatgcaacttccct
tcgatcgctgttcactcgggtgtcagccaggaggaacgtatccgtcgctacaaggaattc
aaggagttcaagaagagaatctgcgttgctactgacgtcttcggccgaggtattgatatt
gagcgtatcaacctcgccatcaactacgatctttcaaacgacgccagctcgtaccttcac
cgagtcggtcgtgccggccgtttcggtaccaagggtctggccatctctttcgtcagcacc
gatcaggaccaggaggtgctgaaggagattgagaagcgattcgaggtcgcccttcctgaa
ttccccaaggagggtgttgatgccagcacttacatggcttcctag
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