Fusarium falciforme: NCS54_00561000
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Entry
NCS54_00561000 CDS
T09198
Name
(RefSeq) Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
ffc
Fusarium falciforme
Pathway
ffc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ffc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NCS54_00561000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ffc03041
]
NCS54_00561000
Enzymes [BR:
ffc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCS54_00561000
Spliceosome [BR:
ffc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
NCS54_00561000
Complex C
U5 SnRNP specific factors
NCS54_00561000
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DDX23
ResIII
P-loop_SecA
PRAI
Motif
Other DBs
NCBI-GeneID:
77791559
NCBI-ProteinID:
XP_053007082
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All DBs
Position
4:2833417..2835561
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AA seq
714 aa
AA seq
DB search
MPLDIEEILRKKKAADAAAAKPRFIPKAQRERLAAEKAKKEEEDKKRKAAEDAQRRREDE
QKWAARPNGSSSTPGESTNGSSSRVPTGPKAMNQENGRGRGREGKKGDKANGDKRSAEDI
EASLLRSRYLGPEVNQQSNFSAKKKRMRTTERKFNFEWDADEDTSRDNDPLYTRQSANHN
GSFAGVGGEFDEEAEERARKRARMIEQRDPENGKERAKGFMEDFFRARDKARQRADRTGL
GKRWSEKSLDEMRERDWRIFKEDFGIATKGGMIPNPMRNWRESNLPPRLLSIVDQVGYKE
PTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISDLPPLEDHNKNDGPYALIL
APTRELVQQIETEAKKFADPLGFRCVSIVGGHSLEEQAYALRNGAEIIVATPGRLVDCIE
RRLLVLGQCCYVIMDEADRMIDLGFEESVNKILDALPVSNEKPDTDDAENAQLMKRYLGG
NDRYRQTMMYTATMPPLVEKIAKKYLRRPAVVTIGNAGEAVDTVEQRVEFVSGEDRRKKR
LQEILSSEAFAPPIIVFVNIKRNCDAVARDIKAMGWSAVTLHGSKTQEQREAALASVRAG
HTQVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGNEDA
DTMYDLKQILSKSSISKVPEELRRHEAAQSRPVRGGGGAARREKEEAPGKGGWQ
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcgatatcgaagagatcctacgaaagaaaaaggcagcagacgctgccgccgcc
aagcctaggttcatccctaaggcccaacgagagcgactggcagctgaaaaggccaaaaag
gaagaggaagacaagaagcgcaaggccgcagaggatgcccaacgacgacgcgaggatgaa
cagaaatgggctgcccgaccaaacggctcatcatcgacgcctggcgaatcgacgaatggc
tcctcttcacgggtgcccacggggcccaaggccatgaaccaggagaatggtcgtggaaga
gggcgtgaagggaaaaagggagacaaagcgaacggggataagcgctcagcagaggacatc
gaggcgtctcttttacgatcacgatatctcggccccgaagtaaatcaacagtccaacttt
tcggcaaagaagaagcgaatgcgcacgacggagagaaagttcaactttgaatgggacgcc
gatgaagatacatcacgcgacaacgatcccttatacacgcggcagagcgccaaccacaat
ggatcctttgctggcgtcggcggcgagtttgacgaggaggccgaggagcgagctcgcaag
cgcgcgaggatgatcgagcagagagacccggagaacggaaaggagcgagcgaagggattc
atggaggacttcttccgagctcgcgacaaggcccggcaacgcgcggatcgtacaggtctg
ggcaagcggtggtcagagaagtcgctggatgagatgcgcgagcgcgactggcgcatcttc
aaggaggactttggtattgcgacaaagggcggcatgatccctaaccccatgcgcaactgg
cgcgagtcgaatctgccacctcgactgctcagcatcgtcgaccaggtcggctataaggag
cctacacccattcagagagctgccatccccatcgctctccaggctcgcgacctcatcggt
gtcgccgttaccggttccggaaagacggcggccttccttctgccgctgctggtgtacatc
tccgacctaccacccctggaggatcataataagaacgatggcccgtacgccctcatcctc
gccccgactcgagaactggtgcagcagattgagaccgaagccaagaagtttgctgacccc
ctcggcttccgctgcgtgagcattgttggtggtcactccctcgaagaacaagcatacgcc
cttcgcaacggtgccgagatcatcgtcgccacacccggtcgtctggtggactgcattgag
cgccgactcctggtgctcggccagtgctgctatgtcatcatggatgaggccgaccgcatg
atcgatctaggctttgaggagtcagtcaataagatcctcgacgccctgcccgtctcgaac
gagaagcccgacacggacgatgcagagaatgcgcagctaatgaagcgctacctcggcggc
aacgaccgctaccgccagaccatgatgtacacggccaccatgcctccgctcgtcgagaag
attgcaaagaagtacctccgccgcccggctgtcgttaccatcggcaacgccggtgaggct
gttgacacggttgagcagcgcgtcgagttcgtctcgggcgaggaccgccgtaagaagcgt
ctacaggagatcctctcctccgaggcctttgcaccccccatcatcgtctttgtcaacatc
aagcgcaactgcgatgctgtcgcgcgagacatcaaggccatggggtggtctgccgtcaca
ctacacggttcaaagacccaggagcagcgagaggccgccctggcttcggtgcgtgccgga
cacacacaagtgctggtcgccaccgatcttgctggtcgtggtatcgatgttcccgacgtt
tctctcgtcgtcaacttcaacatggccaccaacatcgagagttacacccatcgtatcggt
cgtaccggtcgtgccggcaagagtggtgttgcaatcaccttcctgggcaacgaggatgcg
gataccatgtacgatctgaagcagatcctcagcaagagctctatttcaaaggtgccagaa
gagctgaggagacacgaggctgcgcagtcgagaccggtacgcggtggaggtggtgcagca
aggagagaaaaggaggaagcgcctgggaaaggagggtggcagtaa
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