Fusarium falciforme: NCS54_00653100
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Entry
NCS54_00653100 CDS
T09198
Name
(RefSeq) RNase-PH domain-containing protein
KO
K12589
exosome complex component RRP42
Organism
ffc
Fusarium falciforme
Pathway
ffc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCS54_00653100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffc03019
]
NCS54_00653100
Messenger RNA biogenesis [BR:
ffc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NCS54_00653100
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
NCS54_00653100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
77792480
NCBI-ProteinID:
XP_053007959
LinkDB
All DBs
Position
5:complement(join(900233..900829,900895..901320))
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AA seq
340 aa
AA seq
DB search
MATQQSLFSPAELAYLHRTLSLRPPIRPDGRTPTQFRPLTAETGVLPGTNGSARVHFADG
TEAIVGVKAEIEKTAGGEEDQGEEDRTRGDWLELAVEIPGQRDDDASTVFLAEMLREALL
ADKEFAKKLRINRRFHWRLYLDVLLISPPLSYPLPLLSLTTHLALLATRLPRLKSEGDED
PMFDDDWEASTFLYPREGAGAAGSRPPITLLVVAVGDNTIFDPAKEELAVAETALAVSVA
EVRRVKTEGDTEVDSTGRQLRLLSIRSVDPPSRLTPPGVPHTTNTNGMKQAGDAQSTEGV
WKAPLGGTKFGVMDGIIQAVLEKGGVADDVLDGLEGVELT
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggcgactcagcaaagcctcttctcgcctgctgagctcgcctacctccaccgcaccctc
tcactccgaccccccatccgacccgatggccgcacgccgacgcagttccgccccctgacg
gctgagactggagttctccctggcacaaacggtagcgcgcgagttcactttgccgacggc
accgaagctatcgtgggagtcaaggcagagattgaaaagacggctggtggagaggaggat
cagggcgaagaggatagaacgaggggcgactggctcgagctggcggtggagattcctgga
cagagggatgatgatgcctcgacggtgtttttggctgagatgttgagggaggcgctcttg
gctgacaaggagtttgccaagaagttgaggatcaacaggcggtttcactggaggctatac
ctcgatgtgctgctaatatcacctccgctgtcataccctctcccccttctctcactcaca
acccatctcgccctcctggctacgcgcctcccgcgcctcaagtccgagggtgacgaagac
cccatgtttgacgacgattgggaggcttcaactttcctgtacccgcgcgagggtgctggc
gcagctggatcgcgacccccaatcactctgctggtcgtcgcagtcggcgacaacaccatt
ttcgacccagctaaggaggagcttgctgtcgcggagacggcgcttgcggtttctgtggct
gaggtgcgccgcgtcaagacggagggcgacacggaagtcgattctacgggccgccagctt
aggttgctgtctatccggtctgttgacccgccttcgaggctcacaccacctggtgtgccg
catactacgaataccaatggaatgaagcaggcgggcgatgcacagagcactgagggagtg
tggaaggcgcctttgggaggaaccaagtttggtgtcatggatggcataatacaggccgtg
ttggagaagggtggtgttgcggatgatgtgttggatggcttggagggcgttgagttgaca
tga
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