Fusarium falciforme: NCS54_00793600
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Entry
NCS54_00793600 CDS
T09198
Name
(RefSeq) Pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ffc
Fusarium falciforme
Pathway
ffc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ffc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NCS54_00793600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffc03019
]
NCS54_00793600
03041 Spliceosome [BR:
ffc03041
]
NCS54_00793600
Messenger RNA biogenesis [BR:
ffc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
NCS54_00793600
Spliceosome [BR:
ffc03041
]
Complex B
Other components
Prp19-related factors
NCS54_00793600
Complex C
NCS54_00793600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_8
TPR_15
RPN7
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
77793885
NCBI-ProteinID:
XP_053009314
LinkDB
All DBs
Position
6:join(1266793..1266852,1266913..1267083,1267149..1269386)
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AA seq
822 aa
AA seq
DB search
MAPIVTTPNGARRQPQLHLVSNEDSVYEQDILRNSASVKPWLAYIEFKARHGTVVEQAFV
MERACAQLPRSYKLWKLYLVFRVKHVAKLNPAIFAAEYRKVNALFERALILLNKMPRIWE
MYLKFLTKQPLVTLTRRTFDRALRALPITQHNRIWAVYRPFANSAAGTTAVKIWRRYMQV
HPEDAEDFIELLVQTGLYTEAALKFIDILNNTRFNSKHGKGHYELWSEMVDLLVEHAAEI
ETGYETGIDAERIIRSGITRFADQRGKLWSGLATYWIRRGSFERARDVFEEGITTVMTVR
DFTLIFEAYTEFEESIIGALMEVASSRAEKGIEDENADFELDIRMMRFEQLMDRRPFLLN
DVLLRQNPNSVPEWEKRVALWGDNKKEVAQTYTDAIAAIQPKRAVGAFHQLWANYAKFYE
RGGDLRNARIIMEKAVKVPFKSVAELADMWIEWAEMELRNENFDDAVRIMAKAVQAPKRS
TVDYFDETLSPQQRVHKSWKLWSFYVDLVESVSTLEETKKVYERIFELRIATPQTVVNYA
NLLEEHKYYEESFKIYERGLDLFSYPVAFELWNLYLTKAVDRKIGIERLRDLFEQAVEDC
PPKFAKTIYLMYGNLEEERGLARHAMRIYERATRAVADEDRADMFNFYITKSASNFGLTS
TRPIYERAIAALPDAEAKDMCLKFADMEKRLGEIDRARAIYGHASQFCDPRTNPDFWTKW
EQFEVQHGNEDTFKEMLRIKRSVQAQYNTDVNFIASQALARSQRRPGGAEDAEVVDAMAA
LERQSRAPQGFVAASTGPTGGKPVPAAVTSNPDAIEIDGLDD
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggcccccattgtcacaaccccgaatggggcgcgcagacagccgcaactgcaccttgtg
tccaacgaagattccgtctacgagcaagatatcctccgcaactccgctagtgttaagcct
tggctagcatacattgaattcaaggcccgccatggcactgtggttgagcaagcattcgtg
atggagcgggcatgcgcccagctgcctcgatcttacaagctctggaagctatatcttgta
ttccgagtaaagcatgtggccaaactgaaccctgcgattttcgccgccgagtaccgcaag
gttaatgccctcttcgaaagagctctaatcctgctgaacaagatgcccaggatttgggaa
atgtatctgaagttcctcaccaagcagccgctcgtgaccttgacccgacgaaccttcgat
cgcgccctaagagcccttccgatcactcaacataaccgcatctgggctgtctatcgacct
ttcgccaactccgccgcaggaacgacggccgtaaagatctggcgacggtatatgcaagtt
catcccgaggatgccgaggacttcatcgaacttcttgtgcagacaggcctttatactgag
gctgccctgaaattcatcgacattctcaacaatacgcgtttcaacagcaagcatgggaag
ggccattacgaactttggagcgagatggttgacctgctcgtcgaacacgcagctgaaatc
gagactgggtacgagacggggatcgacgccgaacgcatcattagaagtggcatcactcga
ttcgctgaccaaagaggaaagctttggtcagggttagcgacctactggatccgacgagga
agctttgaacgggcccgtgatgttttcgaagagggcattaccaccgtcatgaccgtccga
gatttcacccttatcttcgaggcctacaccgagttcgaagagtccatcatcggcgctctc
atggaagtggcatcttcgcgggctgaaaagggtatcgaggacgagaatgcggatttcgag
ctggatatcagaatgatgcgttttgaacagctcatggatcgccgaccttttcttctcaac
gacgtccttttgagacaaaaccctaacagtgtacccgaatgggagaagagggtagctctt
tggggcgataacaagaaagaagttgcgcagacatataccgatgcgatcgcagccattcag
ccaaaacgggctgttggcgcctttcatcaactttgggccaactacgccaagttttacgag
cgtggtggcgatttgcggaatgctcgcatcatcatggagaaagctgtcaaggtccccttc
aagtccgtggctgagctcgctgacatgtggattgaatgggcagagatggagttgcggaac
gaaaactttgatgatgccgtccgaatcatggcaaaggctgtacaggcacccaaacgatct
accgtcgactacttcgatgagaccctatcaccgcagcaaagagttcacaagagctggaag
ctctggagcttctatgtcgatctcgtggagagtgtttcgaccctggaggagactaagaag
gtgtacgaacgaatattcgagcttcgcattgcaacacctcagaccgtggtcaactacgcc
aacctgctagaagaacacaagtactacgaggagtcgttcaagatctacgaacgaggcctg
gatctcttcagctatcccgttgcctttgagctctggaacttatatctaaccaaggccgtt
gaccggaagattgggattgaacgactgcgcgatctctttgagcaggctgtcgaagattgc
cctcccaagttcgcgaaaacgatttatttgatgtatggtaacctcgaagaggagcgtgga
ctagctcgacacgccatgcgtatttacgagcgagctacccgagcggttgcagacgaggac
cgtgccgacatgtttaacttttacatcacgaagtccgcttccaactttggcctcacatcg
accaggccaatttatgagagggccattgcagctcttcctgatgctgaagccaaggacatg
tgcctcaagtttgcagacatggagaagaggctgggcgaaatcgaccgagcccgcgcaatc
tacggacacgcttcccagttctgcgaccctcgaaccaaccccgacttctggacgaaatgg
gagcaattcgaagttcagcacggcaacgaggacactttcaaagagatgttgcggatcaag
cgaagtgtgcaggcccagtacaacacggatgtcaatttcatcgcatcacaagcattggca
cgtagccaacgccgacccggtggtgcagaagatgctgaagttgtggacgcaatggcagca
ttggagagacagtcaagggcaccacaaggattcgtggcagcaagcacaggcccaacaggg
ggtaaaccggtgccggcagccgttacctcgaaccctgacgcgatcgagattgacggtctt
gatgattga
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