Fodinisporobacter ferrooxydans: LSG31_02040
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Entry
LSG31_02040 CDS
T10129
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ffe Fodinisporobacter ferrooxydans
Pathway
ffe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSG31_02040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffe03019
]
LSG31_02040
03400 DNA repair and recombination proteins [BR:
ffe03400
]
LSG31_02040
Enzymes [BR:
ffe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LSG31_02040
Messenger RNA biogenesis [BR:
ffe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LSG31_02040
DNA repair and recombination proteins [BR:
ffe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LSG31_02040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HEAT_2
HEAT
HEAT_EZ
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Arm
DUF4530
NdhM
Helicase_C_2
TTI1
Motif
Other DBs
NCBI-ProteinID:
UOF91065
LinkDB
All DBs
Position
complement(367520..369556)
Genome browser
AA seq
678 aa
AA seq
DB search
MITRKQAYDTLQHRFGYASFRPGQMEVIRSVFQKRDTLGIMSTGAGKSLCYQFPSLFLPG
ITLVISPLIALMQDQVDSLKKKGYQAVTYINSALHPTEVKLRISQTRQGLYKILYIAPER
LRSLEFRRALQTLDISLLVVDEAHCISEWGHDFRTDYLAIGDIRQEIGTPPILALTATAT
TFVRNDIVKQLKMVHPVVVQKGLNRPNLSFYFRECKTREEKWLSGLQFLHSQTGKGIVYM
PSRNECEQFSTFLSQYYSATEIAYYHAGLEATDRMQVQERFSNDRLRIVVATNAFGMGID
KADIRYILHLHMPSSIEAYYQEAGRAGRDGAPSVCAVFYQPQDRGIHQYFLKREYPQGEV
YDRAVACILAAPSLSGKRLEWEWLLQAQAVTQDNWELLFHIWEQLGCLERIDSDALGMLV
EVDLERLQTCRFQTLRYLQKLKHRRQDKLLAMYRLLQTNVCRRQQILSYFQSQPSILPNG
SDELQDHPQSWESKGRKSMADSCCDICNHGLQFHVPGKNAEHAWKTSEEPNLSHAAAETA
AACDRLADPEANPALAEQMLAKQSVKLLTEDEEAHRIGEQRDDTHLWRLYELLDSPKVNT
RRLACSALGKIAAAESVPYLIPRLQDSNPQVRQYALVALKKIGSDLAEHAVRNLLLAEEK
EYNIRAAREYLGMIKSSE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
gtgattactcgaaaacaagcgtatgacacgttgcaacatcgatttggttatgcaagtttt
cgccccggacagatggaagtgattcgctctgtttttcaaaaacgggacacattgggaatt
atgagtaccggtgcgggaaagtcgttatgctatcagtttcccagtctttttttgccgggg
atcactctggtcatttcaccgctgattgctctcatgcaggaccaagtggacagcttgaag
aaaaaaggctatcaggcagtaacatatatcaacagcgcattacatccgacagaagtaaaa
ttgcgcatttcacagacgcggcagggactgtacaagattttgtatatcgcgccggagcgg
ctgcgcagtctggaatttcgccgggcattgcagacattggatatatccttgctggttgtc
gatgaggcccattgcatatccgaatggggccatgactttcgaaccgattacttggcgatt
ggggacattcggcaagagattggcactcctcccattcttgcactgactgcgacagccaca
acatttgtgcggaacgatattgtcaagcagttaaaaatggtacatcctgtggtggttcaa
aaaggtcttaatcgtcccaatctgtccttttactttcgggaatgcaagacacgggaagaa
aaatggctctccggactgcagtttctacactcccagacgggcaaaggaatcgtctatatg
ccctcccgcaacgaatgcgaacagttcagcacgtttctttcccaatattactccgcgacg
gaaatcgcctactaccatgcagggttggaagcaacagaccgcatgcaggttcaggaacgt
ttttccaatgatcggctgcgcattgtcgtggcgacaaacgcgtttggcatgggaattgac
aaagcggatattcgctatatcctgcatttgcatatgccaagcagtatcgaagcgtattat
caggaagctggccgggcgggacgagatggcgcaccgagtgtttgcgctgttttttatcaa
ccccaagacaggggaattcaccaatatttcttaaaacgtgaatatccgcaaggtgaagtg
tatgacagggcggttgcttgtattttggcagctccctctctctccggaaagcgtctcgaa
tgggaatggctgttgcaagcacaagccgttacacaggacaattgggagctcttatttcat
atctgggagcagcttggctgtttggaacgcatcgacagcgatgcacttggcatgttggtg
gaagtggatttggaacgcttgcaaacctgtcgttttcagacgctgcggtatttgcaaaaa
ttaaaacatcgccgtcaagacaaactgttggcgatgtatcgcctactacagacgaatgtt
tgccgccgacagcaaattctctcctattttcaatcacagccctcaattcttccgaacgga
tcggacgaacttcaggatcatccgcagagttgggaatcaaagggcaggaaatcaatggcg
gattcttgctgcgatatttgcaatcacggactacagttccatgtgccaggaaaaaatgct
gaacatgcatggaaaacatcagaagagccaaatctctcgcatgcggcggcagaaacagca
gccgcatgcgatcgtttggcagatccggaagcaaatccggcgcttgccgaacaaatgctt
gccaaacaatcggtcaagctcctgacagaagatgaagaagcgcatcggatcggcgagcaa
agggatgatacacatctttggcggttgtatgaactgttggacagtcccaaagtcaataca
aggcgcctggcttgctcggcgcttggaaaaattgccgccgcggaatccgttccctatctg
ataccgcgtctgcaagattccaatccccaagtgcgacaatatgcattggtcgcattaaag
aaaatcggcagcgatctggctgaacatgcggtgcggaatttgttgctggcagaagaaaaa
gaatataacattcgagctgccagagaatatctcgggatgatcaagtctagtgaatag
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