Fodinisporobacter ferrooxydans: LSG31_02385
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Entry
LSG31_02385 CDS
T10129
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ffe Fodinisporobacter ferrooxydans
Pathway
ffe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSG31_02385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffe03019
]
LSG31_02385
03009 Ribosome biogenesis [BR:
ffe03009
]
LSG31_02385
Enzymes [BR:
ffe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LSG31_02385
Messenger RNA biogenesis [BR:
ffe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LSG31_02385
Ribosome biogenesis [BR:
ffe03009
]
Prokaryotic type
rRNA helicases
LSG31_02385
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
UOF91128
UniProt:
A0ABY4CPK3
LinkDB
All DBs
Position
complement(460664..462016)
Genome browser
AA seq
450 aa
AA seq
DB search
MASRFLELGIRPDIVKRIRTLGILEPTPIQEKAIPVLLQGKDMIAQAQTGTGKTFAFLLP
ILERIDPQIPVVQSLIITPTRELALQITIEVKKIASTVGAEVLAAYGGQDVEAQVRKLKR
ATHIVIGTPGRLLDHLRRGTIDLYKLSMLVLDEADLMLHMGFLSEVEQIIAQASADRQMM
LFSATMPNEIRSLAKRYLHNPFEVKVKSEHVTVDEIEQVVIETTDRAKQQALVKTLERYN
PYLAIIFCRTKLRAKKLNESLQGLGFQADELHGDLSQAKREKVMKQFREAKIQYLIATDV
AARGLDIEGVTHVFNYDIPHDVESYIHRIGRTGRAGETGVSVTFAAPKDRPFLHLIEQGI
HRSIERIHFDGQQMVPKEKEKTRRENARSESLSHSNARHGKRERKNQRERVRGHNGSAFR
DRDDNHSNERGRRGSYRSSGGRSGSRSRSK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggccagcagatttctggagctcggcattcgcccggacattgtaaaacggatccgcact
ttggggattctagagccgacgccaattcaggagaaagccattcccgtattgcttcaagga
aaagacatgatcgcacaggcacagacgggaacggggaagacgtttgctttccttttaccg
attttagagcggatcgatccgcaaattcccgttgttcaatccttgattatcacacccaca
cgggaacttgctctgcagattactatcgaagtgaaaaaaatcgcatctaccgtaggtgcg
gaagtgttggcagcatacggcgggcaggatgtagaagcgcaagtgcgtaaattaaaaaga
gcgacacatatcgtcatcggcacccctggacggctgctggatcatctgcgcagaggcacc
attgatctctacaagctctctatgcttgtgctcgatgaagcagatttgatgttgcatatg
ggctttttgtctgaagttgagcaaatcatcgcacaggcatcagcggatcgacaaatgatg
ctcttttcggcaacgatgccaaacgaaattcgttcattggctaaacgatatttgcataat
ccttttgaagtaaaagtaaaaagtgaacatgtaaccgttgatgagattgagcaagtcgtt
attgaaacaacggatcgcgccaagcagcaagcgctcgtgaagacattggaacgttacaat
ccatatttggcaatcattttttgccggacaaaactgcgtgcaaaaaagttgaatgaatcg
ttacaaggattagggtttcaagcggatgaactgcatggagatctctcgcaggcaaagcgt
gagaaagtcatgaagcaattccgtgaagcgaaaatccagtatttgatagctacagatgtg
gcggcgcgtggtctggatatcgaaggcgtaacgcatgtcttcaattacgacatcccacat
gatgtagagagttacatccatcgcatcgggcgtaccgggcgagcaggagagaccggagtt
tctgtcactttcgcagcaccgaaagatcgcccgtttctgcatttgatcgaacaaggaatt
catcgttctattgaaagaattcatttcgatgggcaacagatggtgccaaaagaaaaggaa
aaaacacgcagggagaatgcgcgatctgaatctctttcccattcgaatgcacgccatgga
aaacgtgagcgaaaaaatcaaagagaacgggtaaggggacacaatggcagtgcattccgg
gatcgggatgacaatcattcgaatgaaagaggccgtagaggtagttatcgttcgagcggc
ggacggtccggttctcgaagtcgcagcaaatag
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