Fodinisporobacter ferrooxydans: LSG31_05995
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Entry
LSG31_05995 CDS
T10129
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
ffe Fodinisporobacter ferrooxydans
Pathway
ffe03030
DNA replication
ffe03430
Mismatch repair
ffe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ffe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LSG31_05995 (holB)
03430 Mismatch repair
LSG31_05995 (holB)
03440 Homologous recombination
LSG31_05995 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ffe03032
]
LSG31_05995 (holB)
03400 DNA repair and recombination proteins [BR:
ffe03400
]
LSG31_05995 (holB)
Enzymes [BR:
ffe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LSG31_05995 (holB)
DNA replication proteins [BR:
ffe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LSG31_05995 (holB)
DNA repair and recombination proteins [BR:
ffe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LSG31_05995 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
Motif
Other DBs
NCBI-ProteinID:
UOF91791
LinkDB
All DBs
Position
1277870..1278871
Genome browser
AA seq
333 aa
AA seq
DB search
MDWSKVGRAGFLLQHAIQSNRLAHAYLFTGPEGMYKLEMARMFARAILCKNSVDKPCNEC
LSCRKCLNGNHPDIIEIHPEGASIKIDQIRSHQKLLSLKSVDVSYKIYIVDRADSMTTEA
ANSLLKVLEEPVSPVVAILIAKSPSSVLPTILSRCQRISFERISSEAIRADLERNQISKD
QVDLLAEIAESTDEARKWAGSDVFAEWIAVVLQLTEDLTYNRGNPLFTIQEKVIKSHSDP
AELSLFLQCLAWWFRDLLHVKLGVFDDLAFQQQLQRLQMQESLYSIDAITNMLVTVITTK
DRLQYNVNVQLAFEHMILRLQEVKHVYSSRGAI
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggactggtcaaaagtaggacgagccgggtttctcttgcaacatgcgattcaaagcaac
cgtttagcgcatgcctatttattcactggaccagaaggcatgtataaattggaaatggcc
cgcatgttcgcaagagcaattttatgtaaaaattctgtagacaaaccgtgcaatgaatgt
ctttcgtgtcgaaaatgcttaaatggaaatcatcctgatattattgaaattcatccggaa
ggtgccagtattaaaatcgatcagattcggagccatcaaaaattgctgtctctgaaatct
gtggatgtatcctataaaatctacattgtggatcgggccgattcgatgacgaccgaagct
gcgaacagccttttaaaagtacttgaggaacccgtttctccagtcgttgccattttgatt
gcaaaaagtccatcttccgtattgcccacgattctttccaggtgccagcgaatttctttt
gagcggatttcttcagaggcaatccgagcggatttggagcggaatcaaatttcgaaagat
caggttgatcttttggctgaaatagcggaaagtactgatgaagccaggaaatgggccgga
tctgatgtgtttgccgaatggatagctgtagtgttacaattaacagaagatctgacttat
aacaggggaaatccactgtttacaatacaggaaaaagttataaaatctcattcagatcca
gcggaactgtcgttgtttctgcagtgtctggcgtggtggttccgtgatcttttgcatgtg
aaactgggcgttttcgatgatcttgcatttcaacaacaattgcagcgtttacaaatgcaa
gaatctctctattcgattgatgccataacgaacatgctcgttactgtcattacgacaaaa
gaccgattgcaatacaacgtgaatgtacagttggcgtttgaacatatgattttgcggtta
caggaggtgaaacatgtatacagtagtaggggtgcgatttaa
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