Fodinisporobacter ferrooxydans: LSG31_06505
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Entry
LSG31_06505 CDS
T10129
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ffe Fodinisporobacter ferrooxydans
Pathway
ffe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ffe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LSG31_06505 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ffe03021
]
LSG31_06505 (rpoC)
03400 DNA repair and recombination proteins [BR:
ffe03400
]
LSG31_06505 (rpoC)
Enzymes [BR:
ffe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LSG31_06505 (rpoC)
Transcription machinery [BR:
ffe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LSG31_06505 (rpoC)
DNA repair and recombination proteins [BR:
ffe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LSG31_06505 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UOF91886
UniProt:
A0ABY4CN21
LinkDB
All DBs
Position
1384525..1388172
Genome browser
AA seq
1215 aa
AA seq
DB search
MLDVNNFEFMKIGLASPDKIRSWSHGEVKKPETINYRTLRPEKEGLFCEKIFGPTRDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTNPGDTPLEKKQLLSEKEYRSAREKYGYSFQAGMGAESIKKLLM
DINMDQEAEMLKEELKTAQGQRRNRAIKRLEVVESFRASNNEASWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLRMYQCGLPKE
MALELFKPFVMKELVAKGLAHNIKSAKRKVERVSPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVNGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAHNIL
NPKDGKPVVTPTQDMVLGSYYLTIEREGEKGEGRIFSSTQEAQLAYQHGEVTLHARIGIP
VKALDKASFTEKQQNAVLLTTVGKLIFNEIFPSEFPYINIGKKENLLHGTPEIYFVYEKG
VNIREKIMELPVQGAIVKGFLGTIIGEVFRRYGTTQTAEILDRIKQLGFRYSTRAGITIS
VADILVPEKKKEILTEADKKVQMVTNQYRRGLITDEERYDRVIAIWSKAKDDITNVLMNS
LDRFNPIYMMANSGARGNVSQITQLAGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDTIVRQDDCGTDKGIVVDEIRDGKEVIEDL
FDRIEGRIAFSNIRHPETKETIVQKNELIDEEKARSIIEAGITRVRIRSVLTCRTRHGVC
INCYGRNMATGQMVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAVITEIDGIVSDIREVKDKREIEVTGESEAKVYAVPYGSRIRVTVQQKVEA
GDELTEGSVDPKDMLKVKGMRGVQNYLLREVQRVYRLQGVDINDKHIEVMIRQMLRKIRI
IDSGDTDLLPGTYVDIYDYEQSNQTALLNGGEPAVARPALLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDRLLGLKENVIIGKLIPAGTGMARYRNIKIDNNDPSLDTESDFDS
DQDIMEEQMAEVVTE
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacaattttgaatttatgaaaattggcttagcttctcctgacaaaatc
cgttcatggtcacatggtgaagtcaagaagccggaaacgattaactaccgtaccttacgc
ccggaaaaagaaggtctgttttgcgagaagattttcgggccgacacgtgactgggaatgt
cattgcggaaagtacaaaagggttcgctataaaggcgttgtttgtgatcgctgcggtgtc
gaagtgacccgtgccaaagtacgccgcgaacgaatgggacatattgaactggcggcgcct
gtttctcatatttggtattttaaagggattccgagccggatgggcttggtattggatatg
tctccgcgggcgcttgaagaagtaatctattttgcttcctacgtcgtaacgaatcccggc
gacactccgcttgagaaaaaacaactcttgtccgagaaggaataccgttccgcccgtgaa
aagtacgggtattcctttcaagcgggcatgggtgctgaatccatcaaaaaattattaatg
gatatcaacatggatcaagaagcggaaatgctcaaggaagagttgaaaacggcgcaggga
caacgccgaaatcgtgcaattaagcgcttggaagtcgttgaatctttccgcgcttccaat
aacgaagcaagctggatgattctcgatgtgttgcctgtcattccgccggaactgcggccg
atggtgcagttggatggcgggcgcttcgctacatccgatttgaatgatctgtatcgtcgc
gtcatcaatcgcaacaatcgcttgaagcggttattggatcttggggcgcccgatattatt
gttcaaaatgaaaaacgcatgctgcaagaagcggttgacgctttgatcgataacggtcgc
cgcggtcgccctgttacagggcccggcaatcggcctttaaaatcactttcccacatgttg
aaagggaagcaggggcgctttcgccagaatttgcttggcaagcgggtcgactactcggga
cgttccgttattgtcgtaggaccgcatttgcgaatgtatcaatgtggactgccgaaggaa
atggcgctggaattgtttaaaccgtttgtcatgaaagagttggtggcaaagggcctcgca
cacaatatcaaaagtgcgaaacggaaagttgaacgcgtttctccggaagtatgggacgtg
cttgaggatgtcatcaaagaacatccagtcttgttgaaccgggcacctaccttgcaccgg
ttagggattcaagcgtttgagcctgtattggtaaatggtcgtgcgatcaagctgcatccc
cttgtgtgtactgcttataatgccgactttgacggagaccaaatggctgttcacgttcct
ctctctgcagaggcgcaagcagaagcgcgtttgttaatgctggctgcccacaatatcctg
aatccgaaagatggaaagccggttgttacaccgacgcaagatatggtgttgggaagctat
tatttaacgatcgaaagagaaggggagaaaggcgaaggtcgtattttctccagtacgcaa
gaagcccagttggcatatcaacacggagaagtgacgttgcatgcccgtattggaatacct
gtaaaagctctcgataaagcaagttttacggaaaaacaacaaaatgcggttttgttgaca
accgttggcaagctgatctttaatgaaattttcccgagcgagttcccgtacatcaatatc
gggaagaaggaaaacttgctgcatggtacacctgaaatatattttgtttatgaaaaaggt
gtaaatattcgggagaagattatggaattgccggttcaaggggcaatcgttaaaggtttc
ttgggcacgattatcggtgaagtgttccgccgctatggaactacacagacggcagaaatt
ctcgaccgaatcaaacagcttggattccgttattctacacgtgcagggattacgatttcc
gtagcggatattcttgtgccggaaaagaaaaaggaaattttaacggaagccgataaaaag
gtgcaaatggttacgaatcagtatcgtcgtggtttgatcaccgacgaagaacgctatgat
cgtgtcattgccatctggagtaaagcgaaagacgatattacgaatgtcttgatgaattct
ttggatcgattcaatccgatctatatgatggcgaactccggagcccgcggtaacgtatca
cagattacacagcttgccggcatgcgggggttgatggcaaatccatccggacggatcatc
gagcttccgatcaaatccaatttccgggaaggacttaccgtgttggaatactttatttct
acacacggtgcccgaaaaggtcttgcagatactgctttgcgaacggctgactccggttat
ttgacccgccgtttggtggatgttgcacaggataccattgtcagacaagatgattgcggt
acagacaaaggaatcgtagtagacgaaattcgtgacggaaaagaagtaattgaagacttg
tttgatcggatcgaagggcgaatcgctttttccaatattcgtcatccggaaacaaaagag
accattgttcaaaagaatgagctgatcgatgaagaaaaagcccggtcaattattgaagca
gggattacgcgggttcgaattcgttccgtattgacttgccgtacgcgccatggtgtttgt
atcaattgttatggccgcaatatggcgactggtcaaatggtcgagatcggtgaagcggtt
ggtattatcgctgcgcaatcaatcggagaaccagggacgcagttaaccatgcgtacattc
catactggtggggttgccggagatgatatcacgcaaggtttgccgcggattcaagaattg
tttgaagccaggaatccaaaggggcaagcggtgattaccgagatcgatggaatcgtgtca
gacattcgtgaagttaaggataaacgagagattgaagtgacgggcgaatcggaggccaaa
gtgtatgcagttccatatggttcacgcattcgcgttacggtccaacaaaaagtcgaagcc
ggcgatgaactgacagaaggatctgtcgacccgaaagatatgctgaaagtaaaaggaatg
cgcggtgttcaaaattatctgttgcgtgaagtccagcgcgtatatcgcttgcaaggcgta
gatattaatgataagcatatcgaggttatgattcgccaaatgctccgcaaaattcgtatt
atagactctggagatacagacttattgccaggaacctatgtagatatttacgactatgag
caatcgaatcaaacagcactgttgaatggcggagagcctgctgtggcgcgtccggctttg
cttggtatcacaaaagcatcgctggagacagattcgttcctgtctgccgcatcgtttcag
gaaacaactcgcgtattgacagatgctgcaattaaaggaaaagtagatcggctgcttggt
ttgaaggaaaatgtgattatcggcaaactcattccggcaggtactgggatggcgcgatac
cggaatatcaaaattgataataacgatccgtcactggacacagagtctgactttgattct
gatcaagatattatggaagagcaaatggcggaggttgtgactgaataa
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