Fodinisporobacter ferrooxydans: LSG31_16050
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Entry
LSG31_16050 CDS
T10129
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ffe Fodinisporobacter ferrooxydans
Pathway
ffe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSG31_16050 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffe03019
]
LSG31_16050 (pnp)
03016 Transfer RNA biogenesis [BR:
ffe03016
]
LSG31_16050 (pnp)
Enzymes [BR:
ffe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LSG31_16050 (pnp)
Messenger RNA biogenesis [BR:
ffe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LSG31_16050 (pnp)
Transfer RNA biogenesis [BR:
ffe03016
]
Prokaryotic type
tRNA degradation factors
LSG31_16050 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
DUF8126
SPATA25
S1_RRP5
Sey1_3HB
OB_RRP5_4th
DUF5105
Mistic
Motif
Other DBs
NCBI-ProteinID:
UOF89400
UniProt:
A0ABY4CNG5
LinkDB
All DBs
Position
3354145..3356226
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AA seq
693 aa
AA seq
DB search
MHRFEMEFAGRPLVLETGKLAKQANGAVLCKYGDTAVLCTVTASKEPKDLDFFPLTVNYE
ERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVSIVMSVDQDC
APEIAAMVGSSAALSISNIPFDGPIAGVIVGRIDGQFIINPTVKEAEKSDLHLVVAGSKD
AIVMVEAGAQEVPEEVMLEAIMYGHEHIKKVVAFQEQMAAEAGQAKMDVVLHAVDQDINT
VVREMATEQLKQAIKTVEKHAREDAIDAVKAEVHAALDEQYPDLVDDISEVLYDIVKEQV
RHAIVFEHSRPDGRGLDEIRPISSEVSLLARTHGSGLFTRGQTQALSICTLGALGDVQVL
DGLDLEESKRFMHHYNFPPFSVGEARAPRAPSRRDIGHGALGERALEAVIPSEDVFPYTI
RLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLVKEGDHVAVLTDIQGME
DHLGDMDFKVAGTAEGVTALQMDIKIKGINREILKQALEKAHAGRMFILGKMLEALNQPR
EELSRFAPRIITLRINPDKIREVIGPGGRVINKIIEETGVKIDIEQDGRIFIAAQEMESG
EKARNMIEGIVREVEAGQTYTGRVTRVEKYGAFVEVLPGKEGLVHISQLAEERVGKVEDV
VSVGDQILVKVTEIDSQGRINLSRKEALKEMKQ
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgttttgagatggaatttgccggcagaccgttggttttggaaaccggaaaactg
gcaaaacaagcaaatggcgccgtattgtgcaaatacggggatactgccgtactttgtacg
gtgacagcatcaaaagaaccgaaagatcttgattttttcccattgacagtgaattatgaa
gaacgtttgtatgcagttggaaaaattcccggaggatttattaaaagggaaggaaggccg
agtgaaaaagccattttggcaagtcgtctgatcgaccgcccgattcgtccgctgtttccg
gaaggatttcgaaacgaggtgcaagtggtttcgatcgtcatgtctgtcgatcaggactgt
gcgccggagattgcggcaatggttggatcatctgctgcgttatcgatttccaatattcct
tttgacgggccgattgccggtgtgatcgtaggaaggatcgatggacagtttatcatcaat
cctactgtgaaagaagcggagaaaagcgatctgcatcttgtcgttgcaggttccaaggat
gcaatcgtgatggtcgaagcaggcgcgcaagaagtgccggaagaagtgatgttggaagca
atcatgtatgggcatgaacatatcaagaaagtagttgcatttcaggaacagatggccgct
gaggctggacaagccaaaatggatgtcgtgctgcatgcagtcgatcaggatatcaataca
gtggttcgggaaatggcaacggagcagctgaagcaagcgatcaagacagtggagaagcat
gcgcgggaagatgcgattgatgctgtcaaggcggaagtccatgcggcattggatgagcaa
tatcccgatctggtggacgatatttcggaagttctctatgatattgtgaaagagcaggtc
cgccatgcgatcgtatttgaacattcccgtccggatggccgggggttggacgaaattcgt
ccgatttccagtgaagtttcactgctggcccgaacacacggaagcggattgtttacgcgg
ggacaaacgcaagcactgtcgatttgcacacttggcgccctcggtgatgtacaagtgttg
gatggattggacttggaagaatccaaacgtttcatgcatcattacaattttccgcctttc
agcgtgggagaagcccgtgcgccccgtgcgccgagccgccgcgatatcgggcatggtgca
ttaggggaaagggcgctcgaagctgtcattccttcggaagatgtgtttccatatacgatc
cgtctggtgtctgaagtgctggaatccaatggatcgacgtcacaggcgagcatctgtgcc
agtacattggcgatgatggatgcaggcgttcccatcaaagcgcctgttgccggcgtagcg
atgggtttggtaaaagaaggcgaccatgtcgctgtattaacggatattcaaggcatggaa
gaccatttgggcgacatggattttaaagtggcaggtacggctgaaggcgttactgcattg
caaatggatataaaaattaaaggcatcaatcgcgagattttaaagcaggcattggagaaa
gcacatgcgggccggatgtttattcttggcaagatgctggaagctctcaatcagccccgc
gaggaattgtcccgctttgcgccgcgtattatcacgctgcggatcaaccctgataaaatt
cgcgaagtcattggcccgggcgggcgtgtcatcaataaaattatcgaggaaaccggcgtc
aaaatcgacatcgaacaagatggccgcatttttatcgctgcacaggaaatggagtccggc
gaaaaagcgcgcaacatgattgaaggcattgtgcgcgaggtggaagccggtcagacgtac
acaggacgagtgacgcgggtggagaaatacggtgcatttgttgaagttcttcccggcaag
gaaggattggtgcatatatcccaattggcggaagagcgtgtaggaaaagtagaggatgtc
gtatccgtcggcgatcaaatccttgtaaaagttacggaaatcgattcgcaaggacgaatc
aatttgtcccgcaaagaagctttaaaagaaatgaagcaataa
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