Fodinisporobacter ferrooxydans: LSG31_16155
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Entry
LSG31_16155 CDS
T10129
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ffe Fodinisporobacter ferrooxydans
Pathway
ffe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSG31_16155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffe03019
]
LSG31_16155
03009 Ribosome biogenesis [BR:
ffe03009
]
LSG31_16155
Enzymes [BR:
ffe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LSG31_16155
Messenger RNA biogenesis [BR:
ffe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LSG31_16155
Ribosome biogenesis [BR:
ffe03009
]
Prokaryotic type
rRNA helicases
LSG31_16155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UOF89420
LinkDB
All DBs
Position
3376906..3378510
Genome browser
AA seq
534 aa
AA seq
DB search
MTTFEDFQLNKRVLQAIHDMGFEEPSPIQASCIPLILGGHDVIGQAQTGTGKTAAFGIPL
IEAVTPGKHVQALVLTPTRELAIQVAGELRKISRYTRMRSIPIYGGQSIVHQIRALQQGV
QIIIGTPGRILDHLRRGTLKFDRLRSIVIDEADEMLDMGFIDDIESILKETPEDRQTLLF
SATMPDQVKRLASKYMNRPEHVTVNRGEVTVPLIDQVYYKVLERHKLESLCRVIDSQDVA
LGIIFCRTKRGVDDLTEALIARGYMVDGLHGDLSQAQRDRVMKKFRNGDIELLIATDVAA
RGIDVDNVTHVINYDIPQDPESYVHRIGRTGRAGKRGLAMTLVTPREFKLLKMIERETKA
RLIAKDIPSIADVAERQAESWREKIRSMILDGGLANYRAMLGDLVDEFDPVDIAAAALKM
ASSNELGEEAYEDYDFGETGGATGMVRFFINVGRTARIAPNDLIKAVSEGAGVPAQAIGK
IDIFDRFTFLEVEEDSAPFVYEALRQSKINGIRINLEPAKPRAKRSPATVAGRS
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgtttgaagattttcaattgaataaaagggttttgcaggcaatacatgacatg
gggtttgaagagccttcaccgattcaggcatcctgtattccattgatactcggcggccat
gatgtgatcggacaggctcagacaggcacggggaagacggctgcctttggcattcccctg
atagaagcggttactccagggaaacatgtccaagcacttgttttaacgcccacgcgtgag
ctggcgattcaagtcgctggggaattgcgaaaaatatcccgatatactcgaatgcgatcc
attccaatttatgggggtcaatcgatcgtccatcaaattcgggcgctgcaacaaggcgtg
cagatcattatcggaacacctggccgtattttggatcatttgcggcgaggaacattgaag
tttgaccgtttgcgttccatcgtcatcgatgaagcggatgaaatgttggatatgggattt
atcgacgacattgaatcgattctaaaagaaacgccggaagacagacaaactttgttattt
tccgctaccatgcctgatcaggtgaagcggttggcaagcaaatacatgaatcggccggaa
catgtgacggtgaatcgcggtgaagtcacagtgccgctgattgaccaagtgtattataaa
gtattggaacggcataaattagaaagcctttgccgtgtcattgacagtcaagatgtcgca
ttgggaattattttttgccggaccaagcggggggtggacgatcttacggaagccctcatc
gcacgcggatatatggtggacgggttgcacggtgatttaagccaggcgcagcgggatcgc
gtgatgaaaaagtttcgcaatggcgatatcgaattattgattgcgacagatgttgcggcg
agaggcattgatgtcgacaatgtaacacatgtgatcaactatgatattccgcaagatccg
gaatcctacgtccacagaatcggccgtaccggacgggcaggaaagcgcggattggccatg
accctcgtcacaccgcgggaatttaaactgttaaaaatgattgagcgggaaacgaaagca
cgtctgattgccaaagatattccatcgatcgcagatgtggcagaacgccaggcggaaagt
tggcgcgagaaaatccgctccatgattttagacggcggattggcaaattaccgtgcaatg
ttaggtgatttggtcgatgaattcgatccggtcgatatagctgctgccgctttaaagatg
gccagctccaatgagctcggcgaagaagcgtatgaagattatgattttggcgaaacaggc
ggagcgacgggaatggtgcgtttctttatcaacgttggccgaactgcgcgcattgcaccg
aatgatttgatcaaggcagtgtcggaaggggcgggagtgccggcacaagcgatcggcaaa
atcgatatatttgaccgctttacgtttttggaagtggaagaagattcagctccatttgta
tatgaagcattgcggcaatccaaaatcaacggtatacggatcaatctcgaaccggcaaag
ccacgggcgaaacgctcgccggcaactgttgccggacgcagttga
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