KEGG   Fodinisporobacter ferrooxydans: LSG31_17770
Entry
LSG31_17770       CDS       T10129                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
ffe  Fodinisporobacter ferrooxydans
Pathway
ffe03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ffe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    LSG31_17770
  09124 Replication and repair
   03420 Nucleotide excision repair
    LSG31_17770
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ffe03021]
    LSG31_17770
   03400 DNA repair and recombination proteins [BR:ffe03400]
    LSG31_17770
Enzymes [BR:ffe01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LSG31_17770
Transcription machinery [BR:ffe03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     LSG31_17770
DNA repair and recombination proteins [BR:ffe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     LSG31_17770
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD
Other DBs
NCBI-ProteinID: UOF89709
UniProt: A0ABY4CH74
LinkDB
Position
complement(3715299..3716978)
AA seq 559 aa
MFSRPLLVQSDGTILLNTTHSDYAEVRRQLLQFAENIKSPEYIHYYKISRLSLWNAAAIG
WTSTRIVQILEDNSEYPVQPAMKHRIIDEFQKYGLLRLVPFRDPDYLLLLGDASILNEFQ
RTGDFQTIPVERVPEGLICSRDHRGSVKQACLRLGYPVVDQAGYTDGEPCVFQWKHGSDF
LRPYQIEALDHFFAGGECNGVIVLPCGAGKTIVGIAAMQRLSMCTLILTPNATSAEQWKR
EILDRTTLPNECIGIYTSGRKTLYPVTIATYQMATYRKGETYPHLDCIRQAPWGFVIYDE
VHLLPAPIFRLSADLQSRRRLGLTATLVREDGLEEEAFVMVGPKKYDVPWKTIEKSGWIA
PARCVEVSIPFVEKDKFNYLQAGKREQHRLAAENPRKIDALEALLRQHAEDRVLVIGQYI
NQLQAAGNRLQVPVITGKTPVKQREEWFAKFRAGEIQSLVVSKVANVAVDMPCANVAIQI
SGTFGSRQEEAQRLGRILRPNAGGRPSYFYTLVTKQSLDQESSTRRQMFLTEQGYQYELR
DFETLLQEGNMYESDHLSK
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgttcagtcgccctttgctcgttcaaagtgatggtaccattttattgaacacgacacat
tctgactacgcagaggtacgcagacaattgttgcagtttgcagaaaacatcaaaagcccg
gagtatattcattattataaaatttcccggttatcactatggaatgctgctgcgatcggc
tggacgagtacgagaattgtgcagattctggaagacaacagcgaatatccggtacagcca
gccatgaagcaccggatcatcgatgaatttcaaaagtacggattgctgcgattagttcct
tttcgagatccggattatcttctcttgcttggtgatgcgtcaattctcaacgaatttcag
cggaccggcgattttcaaaccatcccagttgagcgggttccggaaggattgatatgcagc
agggatcacaggggaagcgtgaaacaggcttgtttgcgcttgggttatccggtggtggat
caagcggggtatacggatggtgaaccttgtgtgtttcaatggaaacatggatccgatttt
ttacgaccctaccaaatcgaagcattggatcattttttcgccggcggagaatgcaatggc
gtcattgtattgccgtgcggggctggaaaaacgattgtcggcattgccgccatgcagcgt
ctttcgatgtgcacgttgatccttacgccgaatgccacatctgcagagcaatggaaacgt
gagatattagatcgaaccactcttccaaatgagtgcatcggcatctacacgtccgggcgg
aaaacattataccccgtcacaattgcgacataccaaatggctacatatcgcaagggtgaa
acatatccacatctggactgcatccgacaggcaccttgggggtttgtcatctatgatgaa
gtacatctcctgccagcgccgatctttcgactgagcgccgacttgcaatcccggcgccgc
ttagggttgacagctacattagttcgggaagacgggctggaagaagaagcatttgtcatg
gttggtcccaaaaaatatgacgtcccttggaaaacgattgagaaatccggatggattgcg
cctgcacgctgtgtggaagtttccattccttttgtggaaaaagataaatttaactattta
caggccgggaaacgggaacaacatcggctggcagcggaaaatccccgcaaaatcgatgca
ttggaagcgctgctgagacaacatgcagaagatcgggtgctggtcattggacaatacatc
aatcaattgcaggcggcgggaaatcgcctgcaagttcctgtcatcacaggaaagacgcct
gtaaagcagcgggaggaatggtttgcaaagtttcgggcgggggaaatccaatcacttgtc
gtgtcgaaggtcgccaatgtggcagttgatatgccgtgtgccaacgttgcgattcagatt
tccggaacatttggctccaggcaggaagaagcgcaacgattgggccgaattttgcggccc
aatgcaggcggcagaccatcctatttttatactcttgttacaaagcaatcccttgatcaa
gaatcatcaacacgccgtcaaatgtttttgacagaacaaggatatcagtatgaactgcgg
gattttgaaactttgctgcaggaggggaacatgtatgaatctgatcacctgtctaaatga

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