Flavobacterium fluviale: HYN86_00580
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Entry
HYN86_00580 CDS
T07714
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ffl
Flavobacterium fluviale
Pathway
ffl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN86_00580 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffl03019
]
HYN86_00580 (rny)
Messenger RNA biogenesis [BR:
ffl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HYN86_00580 (rny)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
HTH_37
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AXB55179
UniProt:
A0A344LMN7
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All DBs
Position
113497..115056
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AA seq
519 aa
AA seq
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MDIITIIIGIVGIAAGFAIAKIIEKSNISNLIKNAKKEAASILKDANLEAENIKKDKILQ
AKEKFIELKSEHEQVILARDKKVAEVEKRVRDKESQVSNELSKAKKVNDDFEAKTAEYNN
KIEVLDKKQAEVDKLHKSQLQQLEVISGLSAEEAKEQLVEGLKAEAKTKAMSHIQETIEE
AKLTAQQEAKKIIINTIQRVGTEEAVENCVSVFNIESDDVKGRIIGREGRNIRALEAATG
VEIIVDDTPEAIILSCFDPVRREIARLSLHKLVTDGRIHPARIEEVVAKTAKQIDDEIIE
VGKRTVIDLGIHGLHPELIKVVGRMKYRSSYGQNLLQHSREVSKLCGIMAAELGLNVKLA
KRAGLLHDIGKVPDTESDLPHALLGMQWAEKYGEKEEVCNAIGAHHDEIEMKSLLSPIIQ
VCDAISGARPGARRQVLDSYIQRLKDLEDVAYGFSGVKNAYAIQAGRELRVIVESEKVSD
DNAANLSFEISQKIQTEMTYPGQVKVTVIRETRAVNIAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggacatcataacgatcattattggtattgtgggtattgcagcaggatttgcaatagct
aaaattatcgagaaaagtaatatttcaaacctaattaaaaacgccaaaaaagaagcagct
tcaattttaaaagatgctaatttagaagctgaaaatattaaaaaagacaaaattcttcaa
gcaaaagaaaaattcattgaattaaaatctgagcacgaacaagttattttagcaagagac
aaaaaagttgctgaagtagaaaaacgcgtgcgtgataaagaatctcaggtttcaaatgaa
ctttctaaagctaaaaaagttaacgacgactttgaagctaaaactgctgaatacaataat
aaaattgaagttttagacaaaaaacaagctgaagttgataaacttcacaaaagtcaatta
cagcagcttgaagtaatttctggtctttctgctgaagaagcaaaagaacaattagtagaa
ggtttaaaagctgaagctaaaacaaaagcgatgtctcatattcaagaaacaattgaagag
gctaagcttactgcgcagcaagaagctaagaaaattattatcaacactattcaaagagtt
ggaactgaagaagcagttgaaaattgcgtttctgttttcaacattgaatctgatgatgta
aaaggtagaattattggtcgtgaaggacgtaacattagagctcttgaagctgcaactgga
gttgaaatcattgttgatgatacaccagaagctatcattctttcttgttttgatccagtt
cgtagagaaattgcgcgtttgtcattacacaaattagtaactgatggacgtattcaccca
gcgagaatcgaagaagtggttgctaaaaccgcaaaacaaatcgacgacgaaattatcgag
gttggaaaacgtacggtaatcgacttaggaattcatggtttacacccagaattaataaaa
gttgtcggcagaatgaaataccgttcttcttacggacaaaatttattacagcactcaaga
gaggtttctaaactttgcggtatcatggctgcagaattaggattgaatgttaaactagct
aaaagagcaggtttacttcacgatattggaaaagtgccagacacagaaagtgatttacca
cacgcacttttaggaatgcagtgggctgaaaaatatggtgaaaaagaagaagtttgcaac
gcgattggagcgcaccacgacgagatcgaaatgaaatctttattgtcgccgattattcag
gtttgtgatgctatttctggagcaagaccaggagcaagacgccaggtattggattcttac
atccaacgtttgaaagatcttgaagatgttgcttacggattcagcggtgttaaaaacgct
tatgcaattcaagctggtagagaacttcgtgtaattgttgaaagtgaaaaagtttcagac
gataacgctgcgaacttatccttcgaaatttcacaaaaaattcaaacagaaatgacttat
cctggacaagtaaaagttacagttattagagaaactagagctgtaaatattgcaaagtaa
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