Flavobacterium fluviale: HYN86_11230
Help
Entry
HYN86_11230 CDS
T07714
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ffl
Flavobacterium fluviale
Pathway
ffl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN86_11230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffl03019
]
HYN86_11230
03009 Ribosome biogenesis [BR:
ffl03009
]
HYN86_11230
Enzymes [BR:
ffl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HYN86_11230
Messenger RNA biogenesis [BR:
ffl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYN86_11230
Ribosome biogenesis [BR:
ffl03009
]
Prokaryotic type
rRNA helicases
HYN86_11230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXB57136
UniProt:
A0A344LT94
LinkDB
All DBs
Position
complement(2555600..2557513)
Genome browser
AA seq
637 aa
AA seq
DB search
MNKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFP
LIQKIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQARDIK
RGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDEKST
WLFSATMPQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAIAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERI
IKQKFEEKTIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINNVLEDLSKEELIKKM
VSVEFNRFITYYKKNRDISAQSGERRERGDSEPREFNNNGAVRYFVNIGSRDNFDWMSLK
DYLKETLDLGRDDIFKVDVKEGFSFFNTDPQHTDKVMDVLNNIQLEGRRINVEISKNDGG
GRRDHNNRGGGRSSGPRREGNFAPRREGSGGGFRSDRNSSRDGGSREGGFRSDRNSAPKR
EGGFRSSAPRNEGGSERAPRRSENFGDSSRPRRSRRD
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaatgaatcgttactgaaggcgattttagatcta
ggatttgaaaatccgtcagaggtacaggaaaaggcgattcccctattattggaaaaagac
acagatatggttgcgttggctcagacagggacagggaaaacggcagctttcggttttccg
ctaattcaaaaaattgatgctgacaacagaaacacacaagcattagttttatcgccaaca
cgagaactttgtttacagattaccaacgaacttaaaaactactcaaaatacgaaaaaggt
attaatgtggtagcagtttacggcggggctagtattacagagcaagctagagacattaaa
agaggagcgcagattatcgttgcaactccaggaagaatgcaagacatgattaacagaggt
ttggttaacattaaaaatatagattactgtattcttgatgaggctgacgaaatgttaaac
atgggattctatgaggatatcgtatctattttatcagatactccagacgaaaaaagtaca
tggttgttctctgcaactatgccgcaagaggttgctagaattgcaaaacaattcatgagc
gaaccagttgaaattactgttggagccaaaaattcaggttctgcaacagtttctcacgaa
ttttacttagtaaatgctcgtgaccgttatgaagctttgaaacgtttagctgatgctaat
ccagatattttctctgtagttttctgtcgtacaaaaagagacacgcaagctattgctgaa
aaattaatcgaagacggatacagtgctgctgctttacacggagatttatctcaagcacag
cgtgatggtgtaatgaaatctttccgcggaagacaaattcagatgcttgttgctactgac
gttgctgcgcgtggtattgacgttgataacgtgacacacgttgtaaactaccaattacct
gatgaaattgaaacgtacaaccaccgttctggacgtactggtagagctggaaaattagga
acttctattgtaattgttacaaaaagtgagttgcgtaaaatttcttctatcgaaagaatc
atcaaacaaaaattcgaagaaaaaactattccatctggaattgaaatctgcgaaatccaa
ttattgcacttagcaaataaaattaaagatacagaagttgatcacgaaattgacaactac
ttaccagcaattaacaatgttcttgaagatttatctaaagaagaattgataaagaaaatg
gtttctgtagaatttaaccgtttcattacttactacaaaaagaacagagatatctctgct
caatctggagaaagacgtgaaagaggagattctgagccaagagaattcaataataatgga
gcagttcgttattttgtaaacatcggttctagagacaattttgactggatgtcattaaaa
gattacttaaaagaaacattagatttaggtcgtgatgatatctttaaagttgatgtaaaa
gaaggtttctctttctttaacactgatccacagcatactgacaaagtaatggatgtttta
aacaacattcaattagaaggtcgtcgtatcaatgttgagatctctaaaaatgacggaggc
ggaagacgtgaccacaacaatcgtggcggcggaagaagttctggaccaagaagagaagga
aactttgctccaagacgtgaaggttctggaggcggatttagaagcgacagaaactcttcg
agagacggaggatctagagaaggcggttttagaagtgatagaaactctgctccaaaaaga
gaaggcggttttagaagttctgctccaagaaacgaaggaggttcagaaagagctcctaga
cgttctgaaaactttggcgacagctcaagaccaagaagatctagaagagattaa
DBGET
integrated database retrieval system
