Flavobacterium fluviale: HYN86_12730
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Entry
HYN86_12730 CDS
T07714
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ffl
Flavobacterium fluviale
Brite
KEGG Orthology (KO) [BR:
ffl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ffl03016
]
HYN86_12730
Enzymes [BR:
ffl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HYN86_12730
Transfer RNA biogenesis [BR:
ffl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HYN86_12730
Prokaryotic type
tRNA splicing ligases
HYN86_12730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AXB57411
UniProt:
A0A344LU19
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All DBs
Position
2889299..2890690
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AA seq
463 aa
AA seq
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MGNKLSGKDLIKLGFPKNNSINIALGQINRYRKKEKKESILTEAKDVLLNPEKYEGNGTW
GKVAEGLIKPVQVRMHQLKTTRAPFTIFGENEIDQQAKFQLYDSLKLPISVAGALMPDAH
SGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPASHFKGREHQLEAILKDNTKFG
MYETHASRVDHDVFYKSEFQDIPLLKNLLPKAYKQLGSSGGGNHFVEFGIAKIDNPENEW
KLEKGEYFAVLSHSGSRGLGAKIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWLA
MNLAGEYAKACHDDIHRRIGKAIGKRVVATIENHHNFAWKEMVNGQECIVHRKGATPAAE
GQLGIIPGSMTAPGYIVKGKGNAESLNSASHGAGRLFSRAKCKSTFTQSEIKKVLKANDV
TLIGGNIDEAPMAYKDITKVMTNQTDLVEVLGTFTPKIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaattatctggaaaagacctgatcaaattaggctttccaaagaacaattca
ataaacattgctctagggcaaataaacagatatagaaaaaaagaaaaaaaggaatctatt
ctaacagaagcaaaagatgtgttgctaaatcctgaaaaatatgagggaaatggaacttgg
ggaaaagttgccgaaggtttgataaagccagttcaagtaagaatgcatcagttgaaaaca
acgagagctccattcactattttcggtgaaaatgaaattgaccagcaggcaaaatttcaa
ttgtatgattcattaaaattaccaatttcagtagccggggctttaatgccagacgcacat
tcaggttacggattgccaattggaggcgttttagcaacagataatgctgtgattccatac
ggagtaggagttgatattggatgccgaatgagtctctcaatattcgatttgccagcttct
cattttaaaggaagagaacatcagcttgaagctattttaaaagacaataccaagtttgga
atgtatgagacgcatgcatcaagagtagatcatgacgttttttataaaagcgaatttcaa
gatattccgttgctgaagaatcttttacctaaagcttacaaacagttaggaagttctggc
ggcggaaaccattttgtagaatttggaattgctaaaatcgataatccggaaaacgagtgg
aagctcgaaaaaggagagtatttcgctgttctttcgcatagtggttcacgtggtttaggg
gcaaaaattgcgaaacattacacttatttagcgactaagcaatgtccgctgccaaaaaat
gtacagcatttggcttggctggatttgaatacacatgacggtcaagaatattggctggca
atgaatttagcaggagaatatgccaaagcctgtcatgatgatattcatagacgaattggt
aaagcaattggaaaaagagtagtggctacgatagaaaatcaccacaattttgcttggaaa
gaaatggtaaacggtcaagaatgtattgtccaccgaaaaggtgcaactccagcagcagaa
ggtcaattgggaattattccgggttcaatgactgcaccaggttacattgtaaaaggaaaa
ggaaatgcagaaagtttaaactctgcctctcatggagctggccgtttattttcgagagca
aaatgtaaaagtacgtttacgcaaagtgaaatcaaaaaggttttgaaagcgaatgatgta
accttgattggaggaaatattgacgaagctccaatggcgtacaaagacattacaaaagta
atgaccaaccaaactgacttagttgaagttttgggaacttttacaccaaagattgttaga
atggatcgataa
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