KEGG   Fervidicoccus fontis: FFONT_0304
Entry
FFONT_0304        CDS       T01936                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ffo  Fervidicoccus fontis
Pathway
ffo03030  DNA replication
ffo03410  Base excision repair
ffo03420  Nucleotide excision repair
ffo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ffo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FFONT_0304
   03410 Base excision repair
    FFONT_0304
   03420 Nucleotide excision repair
    FFONT_0304
   03430 Mismatch repair
    FFONT_0304
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ffo03032]
    FFONT_0304
   03400 DNA repair and recombination proteins [BR:ffo03400]
    FFONT_0304
Enzymes [BR:ffo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FFONT_0304
    6.5.1.6  DNA ligase (ATP or NAD+)
     FFONT_0304
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     FFONT_0304
DNA replication proteins [BR:ffo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    FFONT_0304
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     FFONT_0304
DNA repair and recombination proteins [BR:ffo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     FFONT_0304
   NER (nucleotide excision repair)
    Other NER factors
     FFONT_0304
   MMR (mismatch excision repair)
    Other MMR factors
     FFONT_0304
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase EF1G
Other DBs
NCBI-ProteinID: AFH42294
UniProt: H9ZZY7
LinkDB
Position
288036..289835
AA seq 599 aa
MDFEIIARTFDALEKISSRIALTNALVDLFKQTSKDEVKIVVYLIQGRLWPDWKGMPEIG
VAEKLLIKAASIALNVKEEQINKIYKEVGDLGKAIEQIKASKDATAGTLTSFLGVQKKEK
LSVKKIYESFVKIATAEGEGSRDIKLRVLAGLLKDAQPIEARFIVRFVEGRLRINIGDAT
VMDALSIAFTGTDANRPIIERAYNLRADLGDIAEILVKDGINALQNITPKVGIPIRPMLA
ERHNDPKVMLEKVGGKAYVEYKYDGERAQIHKSNDEITIFSRRLENITHQYPDVVEYSRK
YIKANEAIVEGEIVAIDPDTRELRPFQILMTRKRKHDITKMMKEVPVSVFLFDAIYVDGK
DLTNFPLPERRKYLESVIAQSDDMQIAQYKYIDNAEDLEKMFYEAISNGAEGVMIKSISE
KSIYQAGNRGWLWIKYKRDYRSEMSDSVDLVVVGAFYGKGKRAGKLSTILVAGYDPDADV
FRTVCKVGTGFTDEELDKMTEEFKGYIIDHKDPRVISEITPDVWLIPKKVVEVIGAELTL
SPLHTCAKGEISKEAGLSIRFPRFINWRPDKGPEDATTCKELVEMYRMQLKQVEEEQNP
NT seq 1800 nt   +upstreamnt  +downstreamnt
atggatttcgagataattgcaagaacctttgacgctttagaaaaaatttcatcaaggatc
gctttaactaacgctcttgtagacttattcaaacaaacttctaaagatgaagtaaagatt
gtagtttatttaatacaaggaagattatggccagattggaagggcatgccagaaataggt
gttgctgaaaagcttttaattaaggcagctagtatagcactgaatgtaaaagaagaacaa
ataaataaaatttacaaagaagttggtgatcttggaaaagctattgagcagattaaagca
agcaaagatgctactgcaggtacattgacatcatttttaggagttcagaaaaaagaaaag
ctaagcgtgaaaaaaatatatgaatcatttgtgaaaatagctactgcggaaggggaaggc
agcagagatataaaacttagagttcttgctgggcttttgaaagatgcgcaacctattgaa
gctagatttattgtgagatttgttgaaggtagattgagaataaatattggagatgcaaca
gttatggatgctttatcgatagcctttactggaactgatgcaaacagacccattatagaa
agagcttataacttgagagcagatctaggagatatagcagagattttagtcaaagatggc
atcaatgctttgcagaatattactcctaaagttggcataccgattaggccgatgttagca
gaaagacataatgatccaaaagttatgttagaaaaggttggcggaaaagcatatgttgaa
tataaatatgatggagaaagggcacaaatacacaagtccaacgatgaaattacaatcttt
tctagaagacttgagaatataacgcaccaatatccagacgtagtagagtactcaaggaaa
tatattaaggctaatgaagctatagttgagggagaaatagttgccattgatcctgataca
agagagcttagaccattccaaatactcatgacaaggaaaagaaaacatgacattacaaaa
atgatgaaagaagtaccagtgagtgttttcttgtttgatgctatttatgttgacggcaaa
gaccttactaactttcctcttcctgaaagaagaaagtatcttgaaagcgttattgctcag
agtgatgatatgcaaattgctcaatacaaatatatagataatgcggaagatcttgaaaag
atgttttatgaagctatcagtaatggagcggaaggggtaatgataaaatcaataagcgaa
aagagcatttatcaggctggaaacagaggatggttgtggataaagtataaaagagattac
agaagcgaaatgagcgattcagtcgacttagttgtcgtaggtgcattctatggcaaagga
aaaagggctggtaagctcagtacaatccttgttgcaggctacgatccagatgcagatgtt
tttaggactgtctgtaaggttggaactgggtttacagacgaagaactagataaaatgaca
gaagagttcaagggctacatcattgatcataaagatcctagagttataagcgagataact
cctgatgtatggctgataccgaaaaaagtcgtcgaagtcataggagcagaattaactttg
agtccattgcatacttgtgcaaagggagaaataagtaaagaggctggcttaagtataaga
ttccctagatttattaattggagaccagataaaggtcctgaagatgctacaacttgcaag
gaattggttgaaatgtacagaatgcaactcaagcaagtcgaagaggagcaaaatccataa

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