Fulvia fulva: CLAFUR5_00233
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Entry
CLAFUR5_00233 CDS
T08195
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ffu
Fulvia fulva
Pathway
ffu03018
RNA degradation
ffu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLAFUR5_00233
09123 Folding, sorting and degradation
03018 RNA degradation
CLAFUR5_00233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffu03019
]
CLAFUR5_00233
03041 Spliceosome [BR:
ffu03041
]
CLAFUR5_00233
Messenger RNA biogenesis [BR:
ffu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CLAFUR5_00233
mRNA degradation factors
5'-3' decay
Lsm complex
CLAFUR5_00233
Spliceosome [BR:
ffu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CLAFUR5_00233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF5350
Motif
Other DBs
NCBI-GeneID:
71980111
NCBI-ProteinID:
XP_047755708
LinkDB
All DBs
Position
1:join(1036856..1036880,1036979..1037250)
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AA seq
98 aa
AA seq
DB search
MSLNSYLNRKVCLILVDGRCMVGNLISCDNVTNLALENCVERIIRSPDEEEPSEEEPRGL
FMVRGDNVVVCGLVDEELDGSIDWTKVKGSEIGTTKHV
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtctctaaacagctacctcaacaggaaagtatgcctgatcctcgttgacggccgttgc
atggtcggcaacctcatatcctgtgataatgtcaccaacctcgctctggagaattgcgtg
gagcgcataatcagatcgccggacgaggaggagccgagtgaggaggagcccagggggttg
tttatggttcggggggacaatgtggtggtgtgtgggttggtggatgaggagttggatggg
agtattgattggacgaaggtcaagggcagtgagattggaacgacgaagcatgtatga
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