Fulvia fulva: CLAFUR5_00651
Help
Entry
CLAFUR5_00651 CDS
T08195
Name
(RefSeq) Regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ffu
Fulvia fulva
Pathway
ffu03013
Nucleocytoplasmic transport
ffu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CLAFUR5_00651
03015 mRNA surveillance pathway
CLAFUR5_00651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffu03019
]
CLAFUR5_00651
Enzymes [BR:
ffu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CLAFUR5_00651
5.6.2.5 RNA 5'-3' helicase
CLAFUR5_00651
Messenger RNA biogenesis [BR:
ffu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CLAFUR5_00651
mRNA cycle factors
Common to processing body (P body) and stress granule
CLAFUR5_00651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
Viral_helicase1
NPHP3_N
SLFN-g3_helicase
UvrD-helicase
PIF1
Helicase_RecD
nSTAND3
AAA_22
Ribosomal_S13_N
AAA_5
AAA_16
Motif
Other DBs
NCBI-GeneID:
71980529
NCBI-ProteinID:
XP_047755404
UniProt:
A0A9Q8P2L4
LinkDB
All DBs
Position
1:complement(3179252..3182542)
Genome browser
AA seq
1096 aa
AA seq
DB search
MAATAMEGAFTQAPNHLVGDSASAIREGDDISTLGAGESALDSEYGRSNLNGGPRRRRGG
DDDEGEPFDDDDAESVASHAVNGTNGVPAPGQEEEVELPAHACAYCDIHNPGSVVKCLSC
SKWFCSARGNTSSSHIINHLVRARHKEVQLHPSSPLGDTTLECYNCGTKNVFLLGFIPAK
SDTVVVLLCRQPCAAMPSSKDMNWDTSKWQPLIEDRSFLPWLVNAPTDQEQMRARHLPPQ
VIAKLEEMWKENSSATIQDLEKNAGIDDEPAPVVLRYDDAYQYQNVFGPLVKIEADYDRK
LKEAQSQDNLIVRWDFGLNNKHLASFVLPKLELGDVKLAVGDEMRLRYTGELRPHWEGVG
YVIKIPNNQSDEVTIELRSRGDHKSVPTECTHNFTADYVWKATSFDRMQHAMKTFAIDEM
SVSGYIFHRLLGHEVAAAPMKVQLPRKFSVPNLPDLNGSQIQAVKSVLQKPLSLIQGPPG
TGKTVTSATIIYHLSKINGGQVLVCAPSNVAVDQLCERIHITGLKVVRVTAKSREDVESN
VGFLSLHRQVQMNDTNVELNKFNQLKAELGELSSQDEKKLKTLTRAAEREILQNADVICC
TCVGAGDPRLAKLKFRTVLIDESTQSAEPECMIPLVLGCKQIVLVGDHQQLGPVIMNKKA
AKAGLNQSLFERLVILGCAPIRLQVQYRMHPCLSEFPSNMFYEGSLQNGITMQQRLRKDV
DFPWPVADSPMMFWSNLGNEEISASGTSYLNRTEASNVEKIVTRFFKAGVSPSAIGIITP
YEGQRSYVVQSMQQTGTFKKEHYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSD
PRRLNVALTRAKYGLVILGNPKVLSKHPLWHYLLLHFKERNCLVEGPLNNLQVSLLQFSR
PKTSYRGPQRYQMAYQHANHMAAATGNRLNGGRRDGPNGGDGSVVGYIPDDISSVHSSAL
GGAALPSQYPPMFQGFQESWPRLSGGQRNGPMAEKAHAPPESVAGESVAASEITDITTNG
TGKPGQGGVSLAGLSINDLNKQASLSQSDKLRRYVEGQGQTQPPIGAGRNRPHLDEDAQS
VSTSFASQVGGVGGYD
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atggcagccacagcaatggagggggctttcacccaggcgcccaaccatctcgtgggcgac
tccgcgtctgccatcagggagggcgacgacatctcgacactcggcgcgggcgagagcgca
ctcgacagcgaatacggccgctcgaacctcaatgggggaccgcgtcggagaagaggcggc
gacgatgatgagggagagccgtttgacgacgacgatgcagagtcggtggctagccatgcc
gtcaacggaacaaatggtgtgcctgctccaggccaggaagaggaggtcgagctgcctgca
catgcctgcgcttactgtgacatccacaacccaggctcagtcgtcaagtgcctgtcgtgc
tccaagtggttctgctctgcccgtggtaatacctcgagcagccatatcatcaaccacttg
gtacgcgctcgccacaaggaggtccagctacacccatcctcgccgttgggagacacaacg
ctggaatgctacaactgtggcaccaagaatgtcttcctccttggattcatcccggccaag
agcgacacggtcgtcgtactgctctgccgccaaccatgtgccgccatgcccagtagcaag
gacatgaattgggacacctccaagtggcagccgctcatcgaggatcgatcattcctacct
tggctcgtcaacgcacccaccgaccaagagcagatgcgtgctcgtcacctcccaccacag
gtcatcgcaaagctggaggagatgtggaaggagaacagcagtgccacgatccaggacctc
gagaagaacgccggcattgatgacgagcctgcgccagtcgtgcttcgctacgatgatgca
taccaataccaaaacgtctttggaccccttgtcaagattgaggcggactacgatcgcaag
ttgaaggaagctcagagccaggacaaccttattgttcggtgggactttggtctgaacaac
aagcacctcgcttcgttcgtgctgccaaagcttgagctcggcgacgtaaagctggctgtt
ggtgacgagatgcgcttgcgctacactggtgaactgcgaccacactgggagggcgtcggc
tatgtcatcaagattccaaacaaccaaagcgacgaagtcaccattgagttgcgctccaga
ggagatcacaagtcggtgccgactgaatgcacccacaacttcactgcggactatgtgtgg
aaggctacctcatttgaccgtatgcagcacgccatgaagactttcgccattgatgaaatg
tccgtgtctggctacatcttccaccgcttgctgggtcatgaggtagcagcggcaccgatg
aaggtgcaactacctcgcaagttcagcgtaccgaatctgccagatctgaacggctcgcag
attcaagccgtcaagtcggtactgcagaagcctctcagcttgatccaaggaccacctggt
actggaaagactgtcacgtcagcaaccatcatctatcatctgtcgaagatcaacggcggt
caagtactggtctgcgccccatcaaacgttgctgtcgatcagctttgcgagcggattcac
attactggtttgaaggttgtccgagtgacagccaagtctcgtgaagatgtcgagtccaac
gttggctttctttcgctgcacaggcaggttcagatgaacgacacaaacgtagagctcaac
aaattcaaccaactcaaagctgagctcggtgaactctccagccaggatgagaagaaactc
aagaccttgacacgtgcagcagagcgtgagattctgcagaatgcggatgtcatctgctgc
acttgcgtcggtgctggtgatccacgactggccaagctcaagttccggactgtactcatc
gacgaaagcacacaatccgccgaaccagagtgcatgattccgctggtcctgggctgcaag
cagattgttctcgtcggtgaccaccaacagcttggtcccgtcatcatgaacaagaaagca
gcaaaggcaggtctgaatcagtctttgttcgagcggctggtcattctaggctgcgccccg
atccgtttgcaagtgcaataccgtatgcacccttgcttatccgagttcccctcgaacatg
ttctacgaaggctccctgcagaacggtatcaccatgcagcagcggttgcgaaaggacgtc
gacttcccctggccagtggccgactcgcccatgatgttctggtcgaaccttggaaacgaa
gaaatcagcgcctctggtacctcatatctcaatcgtacagaagcctcgaacgttgagaag
attgtaactcgcttcttcaaggctggcgtcagtccttcggcaattggtatcatcactccg
tacgaaggtcagcgctcttacgtcgtgcagagcatgcagcagacgggcacattcaagaag
gagcactacaaggagattgaggtcgcctcagtggatgcattccagggacgtgagaaggac
ttcattgtgctttcttgtgtgcgaagtaacgatcaccaaggcattggtttcttgagcgat
ccccgacgtctcaacgttgcgctgactcgtgctaagtatggtctggtcattcttggcaat
ccgaaagtgctcagcaagcacccattgtggcactacttgttgctgcatttcaaggagcgc
aactgccttgttgaggggcctctgaacaacctgcaagtctctctgcttcaattcagtcgt
ccgaagacatcctaccgtggtccgcagcgctaccagatggcttaccagcacgccaatcac
atggcagcagcgactggcaaccgtttgaatggtggtcgtcgtgacggtcctaatgggggt
gatggcagcgtggttggctacattccagatgacatctcatctgttcactcttctgcattg
ggtggcgcagctcttccaagccagtacccgccaatgttccaaggcttccaagaatcctgg
ccaagactctctggtggtcagcgcaacggcccgatggctgagaaggctcatgctccacca
gagtcggttgctggcgaaagcgtggctgccagcgagattacagatatcaccaccaatggc
actggcaagcctggtcagggaggagtaagtctggctggtctgagcatcaacgatctcaac
aagcaggcatcgctctcccagtctgataagctccgccgttacgtggaaggccagggtcaa
actcagcctcccatcggcgctggtcgcaatcgtccacatctggacgaggatgctcagtct
gtgagcacttcatttgcaagccaagtcggaggtgtaggtggctatgactga
DBGET
integrated database retrieval system
