Fulvia fulva: CLAFUR5_01645
Help
Entry
CLAFUR5_01645 CDS
T08195
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ffu
Fulvia fulva
Pathway
ffu03013
Nucleocytoplasmic transport
ffu03015
mRNA surveillance pathway
ffu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLAFUR5_01645
09122 Translation
03013 Nucleocytoplasmic transport
CLAFUR5_01645
03015 mRNA surveillance pathway
CLAFUR5_01645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffu03019
]
CLAFUR5_01645
03041 Spliceosome [BR:
ffu03041
]
CLAFUR5_01645
Enzymes [BR:
ffu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLAFUR5_01645
Messenger RNA biogenesis [BR:
ffu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CLAFUR5_01645
Spliceosome [BR:
ffu03041
]
Complex C
Other components
EJC/TREX
CLAFUR5_01645
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CLAFUR5_01645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
71981523
NCBI-ProteinID:
XP_047755878
UniProt:
A0A9Q8L627
LinkDB
All DBs
Position
1:join(8340556..8340814,8340975..8341366,8341402..8341708,8341759..8342119,8342172..8342526)
Genome browser
AA seq
557 aa
AA seq
DB search
MSAGEEDLIDYSDEELQPTDGATATGAPGAAANGEAKKGDLTVSGSGAAQAKGSYVGINS
ASFRDFLLKPELLKAITDCGFEHPSEAGEALPGSTRACLSPAKRRHEDMYYVCGYILCCA
VLAGAYDVKSMQEGRFVGERHVKESLVQKRRNAPLLPSTFKALKTVGKDDGWTLRTQLFS
RIHNGRTESNISLQSNKSAFLRPFSEPTCSVRQSPVLQIEPVAGEASVLVMCHTRELAFQ
IKNEYARFSKYMPEVKTAVFYGGTDINKDKAMLKDKETHPHIIVATPGRLNGLVREKALR
LGSVSRFVLDECDKMLDQIDMRRDVQEIFRATPTQKQVMMFSATLSQATRPICKKFMQNP
LEIYVDDEEKLTLHGLQQYYIKCDEGEKNRKLNDLLDTLQYNQVIIFVKNTLRCGELDRL
LRECNFPSIAVHSGVSQEERIKRYQAFKNYDKRICVSTDVFGRGIDIERINLAINYDMPE
SVEKGADPEAKEALASSADTYLHRVGRAGRFGTKGVAISFVTNDRDKKVIAEIESRFGKA
IDEYPEDGKVDVKGGDQ
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccggcgaagaagacctcatcgactactccgacgaggagcttcagcccaccgac
ggcgcgaccgcgactggcgcacctggagctgccgctaatggcgaggccaaaaagggcgac
ctgaccgtgtctggatctggcgccgcgcaggccaagggcagctacgttggtatcaactcc
gccagtttccgtgacttcctcctgaagccggaactcctcaaggccatcacggactgtggt
ttcgagcatccatcagaggctggcgaggcactacctggaagcacccgtgcttgtttgagc
cctgctaagcggaggcacgaagatatgtactacgtctgtggttacatactctgctgtgca
gtgctggcgggagcatatgacgtaaagtctatgcaggaaggccgctttgtgggagaaagg
cacgttaaggagagccttgtgcaaaagaggcggaatgcgccattgcttccaagcactttt
aaagcattgaaaacggtgggcaaggacgatggatggacgcttcggacacagctgttttcg
cgcatacacaatggacgaacagaatctaacatctccctccagtccaacaagtctgcattc
ctcaggccattctcggaaccgacgtgctctgtcaggcaaagtccggtcttgcagatcgag
ccggtcgccggtgaggccagcgtgttggtcatgtgccacacccgtgagttggccttccaa
atcaagaatgaatacgcacgattcagcaagtacatgccagaggtgaagaccgctgtcttc
tatggaggcacagacatcaacaaggacaaggcgatgctgaaggataaggagactcacccg
cacatcattgttgcaacccccggtcgtctcaatggcctcgtccgcgagaaggctctccga
ctcggcagcgtgtcccgcttcgtcctcgatgagtgtgacaagatgctcgaccagattgac
atgcgccgcgacgtgcaggaaatcttccgcgcaactcctactcagaaacaagtcatgatg
ttttctgccactctatctcaagccacacgcccaatctgcaagaagttcatgcagaatcct
ctggagatctatgtggacgacgaagagaagttgactctgcacggtcttcagcagtactac
atcaagtgtgacgaaggcgagaagaaccgaaagctcaacgacctgctcgacacgcttcag
tataaccaggtgatcatcttcgtcaagaacacgctgcgatgtggtgagctggaccgactt
ctgcgagaatgcaacttcccgtccattgctgtgcactctggtgtcagccaagaagagcgt
atcaagcgctatcaagccttcaagaactacgacaagcgtatctgtgtcagcacggacgtc
ttcggtcgtggtattgacatcgagcgcatcaacttggccatcaactacgacatgcccgag
tctgtcgaaaagggcgccgacccagaggcaaaagaagcgttggcctcgtcggccgacaca
tacctccaccgtgttggtcgtgctggacgtttcggtaccaagggtgtcgctatcagcttc
gttaccaatgaccgcgacaagaaagtcatcgccgagatcgagagcaggttcggaaaggcc
atcgacgagtacccagaggatggcaaggtcgatgtcaagggaggcgaccagtag
DBGET
integrated database retrieval system
