Fulvia fulva: CLAFUR5_04361
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Entry
CLAFUR5_04361 CDS
T08195
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ffu
Fulvia fulva
Pathway
ffu03020
RNA polymerase
ffu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLAFUR5_04361
09124 Replication and repair
03420 Nucleotide excision repair
CLAFUR5_04361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ffu03021
]
CLAFUR5_04361
03400 DNA repair and recombination proteins [BR:
ffu03400
]
CLAFUR5_04361
Enzymes [BR:
ffu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLAFUR5_04361
Transcription machinery [BR:
ffu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CLAFUR5_04361
DNA repair and recombination proteins [BR:
ffu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CLAFUR5_04361
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
71984239
NCBI-ProteinID:
XP_047760830
UniProt:
A0A9Q8LFW9
LinkDB
All DBs
Position
4:complement(join(1631181..1631199,1631255..1636230,1636283..1636353,1636416..1636695))
Genome browser
AA seq
1781 aa
AA seq
DB search
MSGFLKSLAPLKTVQEIQFGLFSPEEIKNMSVCHIEYPETMDESRTRPREKGLNDPKLGT
IDRTARCGTCGEEQLECPGHFGHIELAVPVFHVGFITKIKKILESVCHNCGKLLEDECLH
ECLQRNPAFVLASRLRDPKRRFEQITKLCKNKSDCQADTEPDKDEQNFGEDPKKPKQPGH
GGCGNIQPTIRKEQLKLIGTWKMAKNEETGDDGGVEKRPITPQMALNIFRNISEEDLARL
GLNVDYARPEWMVLTVLPVPPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVRRC
EQEGSPQHIHEEFYSLLQYHVATYMDNDIAGLPRAQQKTGRPLKAIRARLKSKEGRLRGN
LMGKRVDFSARTVITGDPNLDLDQVGVPRSIARVLTFPERVTVYNIHKLQGLVRNGPLEH
PGAKFIIREDGSRIDLRYHKRAGEISLQLGWIVERHVVDNDYIIFNRQPSLHKESMMGHR
VKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHETRAEVANLCAVPHNIVSPQKNGP
LMGIVQDTMAGIYMMTRRDVFLDYEQVMNILLWVPGWDGVVPPPAIIKPLPRWTGKQIAS
LTLPAGLNILRLKKDHMPLTEEKDDGLVIQNGEIIWGRMVKGIVGASGGGVVHCIFNDRG
PDAAVEFFNAAQRVVCYWLLHNGFSVGIGDTIPDEFMVGKIEEEIAERKAEVDVLESEVQ
GNELEPAPGMTIRETFESKTKAALDNARNKSGDVAYKHMRACNNVGIMVKSGSKGSTTNV
SQMTAAVGQQSLEGKRLPFGFKYRVLPHFPKDDYSPASRGFVENSYLRGLTPQEFFFHAM
GGREGLIDTAVKTAETGYIQRRLVKALEEVMIKYDSTVRNSLGDILQFTYGEDGLDAMFI
EEQPLSIIAASHEQFDKKYKLDLINPTSKDQSLSPNMLEMANELRGDVEVQKLFDAEYEA
IANDRDKIRKSVDDDKEQRYLPLNLSRMIMNAKDKFKINDNSKSDLDPRETIPKVAALLK
RLQVIRGEDALSIEADLNATLLCKALFRSRLAFKRVVNEDHLSKLALDNILGDIENRFLR
ALVSPGEMVGVLAAQSIGEPATQMTLNTFHLAGVTAKTTTKGVPRLKEILNVAENIKTPN
MKVFQLPESIPSKDDAKDLRSKVEFTSLRGVTDETEIYYDPDVQSTVIEADKDMVEAHFI
MPDDDESPDMQGKWLLRITLGRAQLLDKGLSVTNVANRIKEMFGRDIAVIFSDDNADDQI
IRVRMNTGGSSKDDEETEEEEDTLKRLEGHMLDTVVLRGVPGVRRAFVSMETRLYEAPDG
ALKYSSGESNCQEWLLDTDGVNLKDILAVEGVDPTRTTCNHFQSIMKVFGIEAVRASLMR
EMKDVLTNDGSYVNHRHMAILCDVMCARGELMAVTRHGINRSDTGALMRCSFEETVEILF
DAASSGELDDCRGVSENIILGQLAPSGTGEFDMLLDTEMLKTVSATQRPVQHMGMGGAGS
PMAEGAMTPYDVGSPMSESGFAGPDYGASFSPIINPGQDEGGGLTAYGGGFNGGMSPYSG
GMSPGYAPTSPFSGMSPTSPAYGYSPTSPSFGNYSPTSPAMGITSPAYAPTSPTYSPASP
AYTPTSPTYSPTSPAYSGGGRGSKVSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPAH
APGSATSPRYSPTSPQYSPTSPQYSPTSPAYSPTSPAYRANGVGSSNSPTSPSYSPRSPV
YSPTSPAQDADSPNSPDKYSPTSPQHSPTSPAYSPASPKEE
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcttcctcaagtcgttggcgccgctcaaaacggtgcaggagatccagtttgga
ctcttctcaccggaagagatcaagaacatgagtgtgtgccatattgagtacccggagact
atggacgagtcgagaacccggccgcgggagaagggcctgaacgatccaaaactcggcacc
attgaccgcaccgccagatgcggtacatgtggtgaggagcagctggagtgtcctggtcac
tttggccacatcgagctggctgttccggtcttccacgtcggcttcatcaccaagatcaag
aagatcctcgagtctgtgtgccacaactgcgggaagctcttggaagatgaatgcttacac
gaatgtctgcagcgcaaccctgcgttcgtactggccagtaggcttcgcgacccaaagcga
cgtttcgagcaaattacgaagttgtgcaaaaacaaatcagactgtcaagccgacactgag
cccgacaaagacgagcaaaacttcggcgaggaccccaagaagccgaagcaaccggggcac
gggggatgcggcaacatccagccgacgattcgcaaggaacagctcaagctcattggcact
tggaagatggcgaagaacgaagagactggtgacgatggcggtgtcgagaagcgtcccatt
acaccacagatggccctgaacattttccggaacatctccgaggaggacctggcacgactc
ggactgaacgtggactatgcccgtccagagtggatggtactgaccgtgctgcctgtgcca
ccaccagcagttcggcctagtatctcggtcgacggcacgagccaaggcatgcgatctgaa
gacgacttgacatacaagctgtccgacatcatccgtgccaactcaaacgttcgacgatgt
gagcaggagggctcgccgcagcacatccacgaagagttctactcattgctgcagtatcat
gttgctacctatatggacaacgatattgctggcttgccacgagcgcaacaaaagactggt
cgtccactcaaggctatccgagcacgattaaagtccaaggaaggtcgtcttcgcggtaat
ctgatgggcaagcgtgtcgacttctcagcacgtactgtcatcactggtgaccccaacctg
gatctcgaccaagtcggtgtcccaagatcgattgctcgcgttctcactttcccggagcgg
gtcactgtctacaacatccacaagctgcagggcctagttcgaaacggaccactcgagcat
ccaggtgccaagtttatcattcgcgaggatggctcacgtatcgatcttcggtaccacaag
cgcgcaggcgagatcagcttgcagcttggttggatcgttgagcgacacgtggtcgataac
gactacatcatcttcaaccgtcagccatcgctgcacaaggagtctatgatgggtcacaga
gtcaaggtcatgccctactcgaccttccgtctcaacctgtcggtcacgtcgccctacaac
gccgatttcgacggtgacgagatgaacttgcacgttcctcaaagtcacgagacacgagct
gaggtcgctaacctctgtgctgtaccgcacaacatcgtctcgccacagaagaacggtcct
ctcatgggtatcgtccaggacactatggcgggtatttacatgatgactcggcgtgacgtg
ttcctcgactacgagcaagtcatgaacattctactttgggtgcctggctgggacggtgtt
gttcccccaccagcaatcatcaagccacttccgcgctggacgggtaagcagatagcatcg
cttaccctcccagccggcttgaacattcttcgtctgaagaaagatcacatgccgctgaca
gaagagaaagacgacggtctggtgattcagaacggcgagatcatctggggtcgcatggtc
aagggcatcgttggtgcctctggtggtggtgtcgtccattgcatcttcaacgacagaggt
cctgatgcggctgttgagttcttcaatgccgctcagcgggttgtctgctactggctgttg
cataatggtttcagtgtcggtatcggtgacacgattcccgacgagtttatggtcggcaag
attgaggaagagatcgcggaacggaaggcagaggtcgatgttctggagtcagaggtccaa
ggtaatgaattggaacctgctccaggtatgaccatcagagagaccttcgagtcgaaaacc
aaagctgcactcgacaacgctcgaaacaagtctggtgacgttgcttacaagcacatgagg
gcttgcaacaacgtcggaatcatggtcaagtctgggtccaagggctcaactacgaatgtc
tcgcagatgacggcggccgttggccagcagtcgcttgaaggcaagcgtcttcctttcggc
ttcaagtaccgagtgctgccgcatttccccaaagacgactactcgccggcatccagagga
ttcgtggagaactcgtatctgcgtggcctaacgccgcaagagttcttcttccacgcgatg
ggtggtcgtgaaggtcttattgacactgctgtcaagactgcagagactggttacatccag
cgtcgtctagtgaaggctctggaagaggtcatgatcaagtacgacagcacggttcgcaac
tctctgggcgatatcctccagttcacttacggcgaggacggtctcgatgccatgttcatt
gaagagcagccactgtcgatcattgctgcatcgcacgagcaattcgacaagaagtacaag
cttgatctcatcaacccaaccagcaaggaccagagcctttcccccaacatgctggagatg
gccaacgagctgcgcggtgacgttgaggtgcaaaagctgttcgacgctgagtacgaagcc
atcgccaacgaccgagacaagattcgcaagagtgttgatgatgacaaggagcagaggtat
cttcccctcaacctcagccgcatgatcatgaacgcgaaggacaaattcaagatcaacgac
aacagcaagagcgatctcgacccacgtgagactatcccgaaggtcgcggcgttgctcaag
cgtctgcaggtcattcgtggagaagacgcactgtccattgaggctgatctcaacgcgact
ttgctgtgcaaagctttgttccgatctcgtctggccttcaagcgtgtcgtcaacgaggat
catctgagcaagctagccctggacaacattcttggagatatcgagaatcgcttcttgcga
gcactcgtcagtcccggcgagatggttggtgtcttggccgcgcaatcgatcggagagcca
gctacccagatgacgctaaacacattccatttggctggtgtgactgcaaagactaccacc
aagggtgtgcctcgtctcaaggaaatcttgaatgtggctgaaaatatcaagacacccaac
atgaaggtcttccagttgccggagtccattccatcgaaggacgatgcgaaggaccttcgg
tccaaggtcgaattcaccagtctgagaggtgtcaccgacgagacagagatctactatgat
ccagatgtgcaaagcactgttatcgaggccgacaaggacatggttgaggcccatttcatc
atgccagatgacgacgagagccctgacatgcagggcaaatggctactgcgcattacactt
ggacgtgcacaattgcttgacaagggcttgagcgtcaccaacgtggccaacagaatcaaa
gagatgtttggtcgcgacattgccgtcatcttctcagatgacaacgctgacgaccaaatc
attcgggtgcgcatgaatactggagggtccagcaaggacgatgaagagaccgaagaagag
gaagacaccctcaagcgtctcgaaggccacatgctcgatacggtcgtgcttcgtggtgtt
ccaggcgtccgtcgtgctttcgtgtccatggagacacgcctgtacgaagctccagatggc
gcactcaaatactcttccggagaaagcaattgccaggagtggctccttgacaccgacggc
gtgaatttgaaggacatcctggctgttgaaggcgtcgacccaacgaggacgacttgcaac
cacttccagtcgatcatgaaggtgttcggcattgaagctgtccgcgcgtctctgatgcga
gagatgaaggacgtgctgaccaacgatggttcttacgtcaaccaccgacacatggccatt
ctttgcgatgtcatgtgcgcaaggggtgagctaatggctgtgactcgtcacggtatcaac
agatccgacactggtgcactcatgcgttgttccttcgaggagactgtcgagatcttgttt
gatgctgcatcatctggagagcttgacgactgtcgaggtgtttctgagaacatcattctt
ggacagttggcgcctagcggtaccggcgagttcgacatgctcctcgacactgagatgttg
aagaccgtcagtgcgacacaacgtccggtccagcacatgggcatgggcggtgctggctca
ccgatggcagagggtgcgatgaccccgtacgacgtcggctcgccgatgtcagagagtggt
ttcgctggcccagattatggcgccagcttttcgccaatcatcaatcctggtcaagacgaa
ggtggcggccttactgcctacggcggaggcttcaacggcggcatgagtccttacagtggc
ggcatgagcccaggctatgctccgaccagtccattcagcggcatgagcccgacgtcgcca
gcttatggatactcgccgacttcaccaagctttggcaactactcgccaacatcgccagcg
atgggcatcaccagtccagcttatgcaccgacgtctccaacatactcgcctgcgagcccg
gcttatacgccaacgtctccaacttactcaccaacatcgcctgcatacagcggcggaggt
cgtggcagtaaggtgtctccgacatcgccctcgtacagcccgacgtcgccttcatactcg
ccgacgtctccctcgtattctcctacatcgccaaactacagcccaacctcaccggcgcac
gctccaggcagtgcaacatcccccaggtactcgccaacgtcaccgcagtacagtccgacg
tcgccgcaatacagtccaacttcgcccgcgtactctcccacaagccctgcgtatcgcgcg
aatggtgtcggtagcagcaactcaccgacatcgccaagctacagtccacggtcaccagtc
tacagtcctacgagtccagctcaggacgccgactcgccaaactcgcccgacaagtacagc
ccaacgagtccgcaacacagccctacgagtccggcatattcgccagcctccccaaaggag
gagtaa
DBGET
integrated database retrieval system
