Fulvia fulva: CLAFUR5_04619
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Entry
CLAFUR5_04619 CDS
T08195
Name
(RefSeq) Exosome complex component SKI6
KO
K11600
exosome complex component RRP41
Organism
ffu
Fulvia fulva
Pathway
ffu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLAFUR5_04619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffu03019
]
CLAFUR5_04619
Messenger RNA biogenesis [BR:
ffu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CLAFUR5_04619
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
CLAFUR5_04619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF5954
LppC
Motif
Other DBs
NCBI-GeneID:
71984497
NCBI-ProteinID:
XP_047760131
UniProt:
A0A9Q8P738
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Position
4:complement(join(2940437..2940908,2940980..2941263))
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AA seq
251 aa
AA seq
DB search
MPLDSSTYALAHLRIDGRRWNELRRIHGQMSTQAAADGSSYFEMGNTKVICTVHGPRQAR
QGGGGGQSREAAIDVEIGIAGFSGMDRKRRGKSDKRVQEMQYTISSAFSSTVFMQFYPHS
TITIVLHVLSQDGALLAACLNAATLALVDAGVPMKDYVAAITTGSTASYASNDEEADPLL
DLNGVEEQELPFLTMGTSTGEDKVTVLVMETRVQVARVESMVSVGLDGCKQVRGILDGIV
REHGKKLLSGR
NT seq
756 nt
NT seq
+upstream
nt +downstream
nt
atgcccctcgacagctcaacctacgccctcgcacacctccgcatcgacggccgacgatgg
aacgagctccgccgcatccacggacaaatgtccacccaagccgccgcggacggaagcagt
tacttcgagatgggtaacacaaaagtcatctgcaccgtccacggacctcgtcaagcgcgg
cagggtggaggtggagggcagagtcgtgaggcggcgattgatgtcgagattggaatagcg
gggtttagtggcatggataggaagaggagggggaagagtgataagcgcgtacaagaaatg
cagtataccatttcctcggcgttctcgagtaccgtgttcatgcaattttacccgcattcg
acgatcacgattgttttgcacgttctttcccaggacggagcacttctggcagcgtgtctg
aatgctgcgactttggcattggtcgatgccggtgtaccgatgaaggactatgttgcggcg
atcacgacaggctcaaccgcatcgtacgcgagcaatgacgaggaggcagatccgctgctg
gacctgaatggcgtggaagagcaggaattgccgtttcttacaatgggcacgagtacgggt
gaggacaaggtcactgtgctggtcatggagacgagagtgcaggtcgcgagggtggagagt
atggtcagcgtgggtctggacggctgtaagcaggtcagagggatcttggatgggatcgtg
agggagcatgggaagaagttgctgtcagggagatga
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