KEGG   Fulvia fulva: CLAFUR5_04728
Entry
CLAFUR5_04728     CDS       T08195                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
ffu  Fulvia fulva
Pathway
ffu03018  RNA degradation
ffu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ffu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CLAFUR5_04728
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CLAFUR5_04728
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ffu03019]
    CLAFUR5_04728
   03041 Spliceosome [BR:ffu03041]
    CLAFUR5_04728
Messenger RNA biogenesis [BR:ffu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CLAFUR5_04728
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CLAFUR5_04728
Spliceosome [BR:ffu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CLAFUR5_04728
SSDB
Motif
Pfam: LSM SM-ATX LSM14 Hfq RnlA-toxin_DBD
Other DBs
NCBI-GeneID: 71984606
NCBI-ProteinID: XP_047760482
UniProt: A0A9Q8LEM0
LinkDB
Position
4:join(3526864..3526984,3527040..3527153,3527210..3527244)
AA seq 89 aa
MSAEPENGGGDGDARDPSGFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNVALEDTKEY
VDGKHRRDYGDAFVRGNNVMYISSDSASS
NT seq 270 nt   +upstreamnt  +downstreamnt
atgagtgcggagccggagaacggcggtggcgacggtgacgcccgtgaccccagcggcttc
ctcagcgagattatcggggctccagttacggtgaagctcaattcaggtgttgtctacaaa
ggcgaactgcaatccgtcgatggctacatgaacgtcgcactcgaagacacgaaagaatac
gtcgatggcaagcacaggcgggactacggagacgcctttgttcgtggcaacaacgtcatg
tacatatcctccgactctgcatcgtcatag

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