Fulvia fulva: CLAFUR5_06279
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Entry
CLAFUR5_06279 CDS
T08195
Name
(RefSeq) uncharacterized protein
KO
K12881
THO complex subunit 4
Organism
ffu
Fulvia fulva
Pathway
ffu03013
Nucleocytoplasmic transport
ffu03015
mRNA surveillance pathway
ffu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLAFUR5_06279
09122 Translation
03013 Nucleocytoplasmic transport
CLAFUR5_06279
03015 mRNA surveillance pathway
CLAFUR5_06279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffu03019
]
CLAFUR5_06279
03041 Spliceosome [BR:
ffu03041
]
CLAFUR5_06279
Messenger RNA biogenesis [BR:
ffu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CLAFUR5_06279
TREX complex
CLAFUR5_06279
Spliceosome [BR:
ffu03041
]
Complex C
Other components
EJC/TREX
CLAFUR5_06279
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CLAFUR5_06279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
71986157
NCBI-ProteinID:
XP_047761845
UniProt:
A0A9Q8LHC7
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All DBs
Position
5:complement(join(4258461..4259123,4259173..4259231,4259286..4259387,4259442..4259580))
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AA seq
320 aa
AA seq
DB search
MSSWIVLRTRPSSVACTTSSSHTDWTKLTTAYLPHRLDVMSQRILTKIGHTTATRMIAMI
AETEGRQHHTMTAHHDMGEHRGTKIRVDNLHYELTEEDLRDLFERIGPTTSVRLLYDRAD
RSLGTAYVIYEDPRDARAAVDDFDGQMANGQPIRLQLMPSGPGPRAPAASLADRMEKPPR
SLFDRIEGGRSGGRQNSRDGGGRRRYRSDSPQKDRLAPPDVDRYVPGRGSRSPIRRRGTP
REGGRRPGERRERGGGGRGGRGGRTDEEGRPVVGGRPKKTAEELDAEMADYWSGSKTDAA
ADNGAPAANDTNGGDIDMDI
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcatggattgttctacggacgcgaccatcttcggtggcctgcaccacgagtagc
agccatacagactggaccaagctgaccacggcatatctgccacacagactcgacgtgatg
agccagcgaatcttgacgaagattggacacacgaccgctacgaggatgatcgctatgatc
gccgagacagaagggcgccagcaccatacgatgaccgcccaccacgacatgggggagcac
cgcggcaccaagattcgtgtcgacaatctgcactacgagctgacagaagaagaccttcga
gatctcttcgaacgcattggcccgacaacatccgtacgccttctctacgaccgcgcagac
cgttctctaggcacagcctacgtcatctacgaagacccacgagatgctcgcgcagctgtc
gacgactttgatggtcaaatggccaacggccagcccatccgccttcagctcatgcccagc
ggtccaggtcctcgagcgcccgcagcgtcgcttgccgatcgtatggagaagcctccacgc
agtctgttcgacagaatcgagggaggtcgcagcggtggcaggcagaatagccgagatggg
ggtggcaggaggagatacagaagcgacagtccacagaaggaccgactcgcgccgccagac
gtggaccgctacgttccaggacgcggatcgcggtcaccgatcagacgtcgcggtacacct
cgtgaaggcggacgacggccaggagagaggagagaacgcggtggtggtggcagaggagga
cgtggcggacgcacagatgaggagggtcgtcctgtcgttggaggcaggccgaagaagact
gcagaagagctggacgctgagatggcggactactggagcggcagcaagaccgacgctgct
gcagacaatggagcacctgctgccaatgacacaaacggcggagacattgacatggatatc
tga
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