Fulvia fulva: CLAFUR5_10007
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Entry
CLAFUR5_10007 CDS
T08195
Name
(RefSeq) General transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ffu
Fulvia fulva
Pathway
ffu03022
Basal transcription factors
ffu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CLAFUR5_10007
09124 Replication and repair
03420 Nucleotide excision repair
CLAFUR5_10007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ffu03021
]
CLAFUR5_10007
03400 DNA repair and recombination proteins [BR:
ffu03400
]
CLAFUR5_10007
Transcription machinery [BR:
ffu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CLAFUR5_10007
DNA repair and recombination proteins [BR:
ffu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CLAFUR5_10007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
71989885
NCBI-ProteinID:
XP_047764195
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All DBs
Position
7:complement(join(669896..670723,670783..671448))
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AA seq
497 aa
AA seq
DB search
MSSSAQWALDYLEQLPGATFTKLYQQPSTALAIFRRMLPHLAKTLVMAMLYMPTPFAAAD
LDTWIRPDMPSQQARDKALSTLSRLRILFDEQDNGKLTYKLSPAYGKSLRLALTGGGDHR
SFGVPCSTPDKTPISIDYLDTFARRQWEAILYYVVGSANRALSGEVDISAGTKSLLQSGE
FVNLKGGGKQRMISTTGFTFLLQDVNAQVWSLLIVYLEASSSLRMDPVEVLSFLFTLGSL
ELGISYSTANLTPTQKHMLDDLADFGLVYRRTPDSQRYYPTRLATTLTSDAPALTNNSLM
KTTVATGDPSTDFAASASDEKGFIILETNYRLYAYTSSPLLISILSLFASLNTRYPNLIT
AKITKASTQAAIAAGITSDQIIDYLTTHAHPVLRRQAAVNDAPILPPTVVDQIKLWQMEG
ERMEATKGYLIRDIGSQEEYDKAVNYADAIGVLAKEFRHKGSFFVTRMEQMQSYFKNEAA
KKKERKEAAERQKIGIA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcttcagcgcagtgggcgctggactacctcgaacagctgcctggtgccacattt
accaagttgtaccagcagccatccacagcactcgccatattccgtcgaatgctgcctcac
ctggccaagacgctcgtgatggcgatgctgtacatgccgacacccttcgcagcagcagat
ttggacacgtggatacggccggacatgccgagtcagcaggcgagagacaaggcgctgagc
acactatcgcggctgcggatcctcttcgatgagcaggacaatggaaagcttacgtataag
ctatcgcccgcgtatggaaagagtctgcggttggcgttgacgggaggtggcgatcataga
tcattcggtgtgccctgctcgacaccagacaagacgcccatctcgatcgactacctggac
acttttgcgcggagacaatgggaggccatactgtattatgtggtaggcagcgcgaaccgc
gctctgtctggcgaagtggacatctcggctggcacgaagtcgctgctgcaatcgggcgag
ttcgttaacttgaagggcggtggaaagcagaggatgatcagcacgacaggattcacgttt
ctcctccaagatgtgaatgctcaggtgtggtcattgttgatcgtttacctggaggcatcg
tcctcgctccgcatggaccccgtcgaagtcctctccttcctcttcacccttggctccctc
gagctagggatctcctacagcaccgcgaacctcacaccaacccagaaacacatgctcgac
gacctcgcagacttcggtctcgtctaccgccgcactcccgactcccaacgctactaccca
acccgcctcgccacaaccctcacctccgacgctcccgccctcacaaacaacagtctgatg
aagacaaccgtcgcgaccggcgacccatcaaccgacttcgccgcctccgcctccgacgag
aaaggtttcatcatcctcgagaccaactaccgcctctacgcctacacttcctccccactc
ctcatctccatcctctccctcttcgccagcctaaacactcgctacccgaacctcataacc
gcaaagataacaaaagcatccacccaagccgccatagccgctggcataacctccgaccaa
atcatcgactacctcacaacccacgcacaccccgtactcaggcgacaagccgcagtcaac
gatgcgccgatcctcccaccgactgtggtcgatcagataaaattatggcagatggaaggc
gagaggatggaggcgacgaaggggtacttgatcagggacattggaagccaggaggagtac
gacaaggcagtgaactatgccgatgcgatcggagtgttggcgaaagagttcaggcacaag
ggtagtttcttcgtgacgaggatggagcagatgcagagctacttcaagaacgaggccgcc
aaaaagaaggagaggaaagaagctgccgagaggcagaagataggtattgcataa
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