Fulvia fulva: CLAFUR5_10110
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Entry
CLAFUR5_10110 CDS
T08195
Name
(RefSeq) Putative ATP-dependent RNA helicase
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ffu
Fulvia fulva
Pathway
ffu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLAFUR5_10110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffu03019
]
CLAFUR5_10110
Enzymes [BR:
ffu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CLAFUR5_10110
Messenger RNA biogenesis [BR:
ffu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
CLAFUR5_10110
mRNA degradation factors
3'-5' decay
Ski complex
CLAFUR5_10110
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Ski2_beta-barrel
zf-C2HE
Motif
Other DBs
NCBI-GeneID:
71989988
NCBI-ProteinID:
XP_047763939
UniProt:
A0A9Q8PBU3
LinkDB
All DBs
Position
7:1030866..1034726
Genome browser
AA seq
1286 aa
AA seq
DB search
MADTLPQALQKLTLASQSVDDDIDDLLDQVKPRKRLRKSPDDVKKKLGADFLTPSTSFSP
EWLDRLQQRWDAPTNYNELFALGPTQTRTIIRFTREGLEGRATGYKEVTVPANSATAKNS
TSLRRKPASRAEFVRGAAGFYPFAPGGLDAVEATAAYEDELFQQNEANGVRKSSKLSKVI
NFAAGGGLLEVPPGFKRGLRVPDKPKQDDESAKEVEEVLDEETDDQHPQSNGVPLPKEDG
EADDSEEGEGEEDIDDLLPLEFPALAAHGPLAMARNKHGGREWAHMVDVNRDVTNFRELV
PEMARDWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYTS
PIKALSNQKFRDFRTEFDDVGILTGDVQIRPEASCLIMTTEILRSMLYRGADLIRDVEFV
IFDEVHYVNDSERGVVWEEVIIMLPEHVTLICLSATVPNTYEFASWVGRTKKKDIYVIST
PKRPVPLEHYLWADKKMFKIVDASKHFIEKGWKDANDALTGRDKVIEAEKKAKEKEEAAV
AAGRGGRGGRGQQNGRGGQQRGGGNQRGGPQQRGRGQPATRGQGNIARTGRGGGRTTAAQ
DRNIWVHLVQHLRKEDMLPCTIFVFSKKRCEENADALSNLDFNTAAEKSAVHMILEKSLT
RLKPDDRTLPQIRRIRELLSRGIAVHHGGLLPIVKECVEILFAKTLVKVLFATETFAMGL
NLPTRTVIFSGFRKYDNKQFRDLLPGEYTQMAGRAGRRGLDSVGYVIIVSPGADEAPPAG
RLRQMMLGQPTKLRSQFRLTYNMILNLLRVEALKIEEMIKRSFSENATQALLPEHEKQIK
VSEADLDKVVRQQCDICDQDIDACHEASVEYQRLTASLHLSMLATPVGRRLIQAKRLVVF
RGKNDVRTAGIILRDGVTKGSPPTVQLLEVISRNPRKRQDPDFLPYLPRFRRRFVPLPQT
ENDMQLRTTTVPLDDVEALTGSHIQMDLAAVLQKDKDALADVKKELLETCSSWTSSSWNE
LDYYKWLKEMDIRTLLDTRSKAAREAQERACIHCDNFPKHFAMAHDQWVIKDKIDSIRQL
MSDQNLQLLPDYQQRISVLKDLGFIDDQSRVELKGKVACEIHSADELVLTELVLENVLAD
YEPEEIVALLSSFVFQEKTEMTPTMTTALEKGQETIVKIAEKVNHYQILHQVILSSDDSN
DFVSRPRFGLVEVVYEWARGMPFSRITDLTDVLEGTIVRVITRLDETCREVKNAARIIGD
PTLFTKMQTCQELIKRDICATASLYM
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggcggacactctgcctcaagcgctgcagaagctgacactcgcgtctcaaagcgtcgac
gatgatatagacgacctgctggaccaggtcaaaccacgcaaacgccttcgcaagtcgccc
gatgatgtcaagaagaagttgggggcagactttctgacgccttcgacatccttcagtcca
gaatggctggaccggctgcagcagagatgggacgctcctaccaattacaacgagctgttc
gcccttggaccaacacagaccaggaccattattcgatttaccagagaggggcttgagggc
cgagcgacgggctacaaagaagtcactgtgcccgcgaacagtgctacagcgaagaactcg
acttcactacgcagaaaaccagcgagtcgagcggagttcgtgagaggcgcagcaggtttc
tacccttttgcgcctggcggtctcgatgcggtcgaagctacagccgcgtatgaagacgaa
ctcttccagcaaaacgaggcgaatggtgttcgaaagtctagcaagctgagcaaggtcata
aactttgctgctggaggcggtctcctggaagtgcctccaggcttcaagcgtggacttcga
gtacctgacaagccgaagcaggatgacgagagtgcaaaggaagtggaggaagtcctcgat
gaggagaccgatgaccagcacccacaatcaaatggtgtgccactgcccaaggaggacggt
gaagctgacgacagcgaggaaggtgaaggcgaggaagacattgacgacctacttccgctc
gagttcccggcccttgccgcacacggacctctggcgatggcacgcaacaagcatggtggc
agagaatgggcacatatggttgacgtcaatcgcgacgtcacgaactttagggaactcgtg
ccagagatggctcgagactggccattcgagctcgacacatttcagaaagaagcagtgtat
cacctcgagaatggcgattcggtgttcgttgcagctcacacatctgccggcaagactgtc
gttgctgagtatgccattgctctggcagccaagcacatgacgaaagccatctacacatca
cctatcaaagcactcagcaatcagaagttcagagacttccggaccgagttcgacgatgtg
ggtatcctgaccggagacgtgcagataagacccgaagcgagctgtctcatcatgacgacc
gagattcttcgcagcatgctctatcgaggagccgatctgattcgggatgtggagtttgtc
atatttgatgaggtgcactatgtcaacgactctgagcgtggagtcgtttgggaagaggtc
atcatcatgttaccagagcacgtcacgctgatctgcttgtcggcgacagtgccgaacaca
tacgagttcgcttcttgggtcggacggacgaagaagaaggacatctatgtcatctctaca
cccaagcgccctgtgccgcttgaacattacctctgggccgacaagaagatgttcaagatc
gtggacgccagcaagcattttatcgagaaaggctggaaggatgctaatgatgctctcact
ggccgcgacaaagtcatcgaagctgagaagaaagccaaggagaaagaagaagccgctgtc
gcagccggtcgtggtggtcgcggtggtcgtggtcagcaaaatggtcgagggggtcagcag
cgcggaggcggcaatcagcgaggcggcccacagcaacgaggcagaggtcagcccgcgact
cgagggcaagggaacatcgctcggacaggtcgtggtggaggccgaaccacagctgctcaa
gaccgtaacatctgggtgcatctggtccagcatctgcgtaaagaagacatgcttccatgc
actatcttcgtcttctcaaagaagcgctgtgaagaaaacgccgacgctttgtcaaacctt
gacttcaacactgctgccgagaagagcgctgtacacatgattttggagaagtctttgacg
cgactgaagccggatgacaggacgctaccacaaattcgccgcatccgtgagctactcagt
agaggcattgccgtccatcatggcggtctcctgccgatcgtgaaagagtgcgtcgagatt
ctctttgcaaagacactggtgaaggtacttttcgccacggagacgttcgccatgggtctc
aatctgccgaccaggactgtcattttctctggcttccgcaagtacgacaacaagcagttc
cgagacctgctgccaggcgagtatactcagatggccggtcgagctggtcgcagaggtctg
gattcggtcggctacgttatcatcgtgtcgcccggagcagatgaagcgccgccagcgggc
cgtctgaggcagatgatgcttggacagccgaccaagctccggtcgcagttccgtctgaca
tataacatgattctgaatctgcttcgtgtagaggcgctgaagatcgaggagatgatcaag
cgatctttctccgagaatgccacacaagcactactaccagagcatgagaagcagattaag
gtctccgaagctgatctagacaaggtcgtgcgacagcagtgcgacatctgcgatcaagac
attgatgcgtgtcacgaagccagcgttgagtatcagcggctcacggccagcctccatctg
tctatgcttgctactccagtcggtcgtcgcctgattcaggccaagcgcttggtcgttttt
cgtggcaagaacgatgttcgaacggctggcatcatcctccgagacggtgtgacaaaagga
tcgccaccaacggtccagctcctcgaagtgatctctcgtaatccacgcaaacgccaggac
ccagacttcttaccatacctgcctcggttcagaagacgtttcgtaccacttccgcagacg
gagaacgacatgcaattacgcaccaccaccgtgccattggacgatgtggaagcgctgaca
gggtcacacattcagatggaccttgcagctgtgctccagaaggacaaagatgccctcgcc
gatgtcaagaaagagctcctagaaacatgctcatcatggacctcgtcaagctggaacgag
cttgactactacaagtggctcaaggagatggacatcagaacacttctcgatacccgcagc
aaagcggcgagagaagctcaggagcgcgcttgcattcactgcgacaactttcccaagcac
ttcgccatggcccacgatcaatgggtcatcaaggacaaaatcgactccatccgtcaactc
atgtccgatcaaaacctccaactcctccccgactaccagcaacgcatcagcgtccttaaa
gacctcggcttcatcgatgatcaatcccgtgtcgagctaaagggcaaggtcgcctgtgag
atccactccgcagacgagctcgtcttgaccgaactcgtcctcgagaacgtcctagcagac
tacgaacccgaagaaatcgtcgcactcctctcctccttcgtcttccaggaaaagacagaa
atgacaccgaccatgaccaccgccctcgagaaaggccaagagacgatcgtcaagattgct
gagaaagtcaaccactaccaaatcttacatcaagtcatcctctcgtctgacgactccaat
gatttcgtgtcccggccgcggtttggactggtggaagtggtgtatgaatgggcgagaggt
atgccgtttagtcggatcacggacttgacggatgtgctggagggcacgattgtgagggtc
atcacgaggttggatgagacgtgtagggaggtcaagaatgcggcgaggattattggagat
ccgacgctgttcacgaagatgcagacgtgtcaggagctgattaagagggatatttgtgct
actgctagtttgtatatgtag
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integrated database retrieval system
