Fulvia fulva: CLAFUR5_11029
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Entry
CLAFUR5_11029 CDS
T08195
Name
(RefSeq) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ffu
Fulvia fulva
Pathway
ffu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLAFUR5_11029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ffu03041
]
CLAFUR5_11029
03009 Ribosome biogenesis [BR:
ffu03009
]
CLAFUR5_11029
Enzymes [BR:
ffu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CLAFUR5_11029
Spliceosome [BR:
ffu03041
]
Complex A
U2 snRNP components
U2 related factors
CLAFUR5_11029
Complex B
CLAFUR5_11029
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
CLAFUR5_11029
Ribosome biogenesis [BR:
ffu03009
]
Eukaryotic type
90S particles
Helicases
CLAFUR5_11029
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
WHD_HA2
AAA_22
SRP54
AAA_19
Flavi_DEAD
nSTAND3
Cas3-like_C_2
NB-ARC
ABC_tran
T2SSE
AAA_23
Motif
Other DBs
NCBI-GeneID:
71990907
NCBI-ProteinID:
XP_047765214
UniProt:
A0A9Q8PE83
LinkDB
All DBs
Position
8:complement(1240853..1243168)
Genome browser
AA seq
771 aa
AA seq
DB search
MADSEQPKKSRFKRQKTNDHRSDDKANPYLAHMNFDNEAGVGLNGGANGKSNGSYNGTDL
SKWPRYGTTAKMAAQAEDGPDNPFTGVPLSDRYFGILKSRRDLPVHAQRQDFLDMYQKSQ
ILVFVGETGSGKTTQIPQFVLYDDLPQTQGKMVACTQPRRVAAMSVAQRVAQEMDVELGG
EVGYSIRFEDKTSPKTILKYMTDGMLLREAMNDHDMKRYSTIILDEAHERTLATDILMGL
LKEVVARRPDLKIIIMSATLDAQKFQKYFNNAPLLAVPGRTHPVEIFYTPEPERDYLEAA
LRTVLQIHASEPEGDILLFLTGEEEIEDAARKISMEADEMIREADAGPLKVYPLYGTLPP
AQQQRIFDPAPPPYKPGGRPGRKCIISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRV
ESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEGAFKKELIDQSYPEILRSNLASTVLE
LKKLGIDDLVHFDLMDPPAPETLMRALEELNYLACLDDEGELTTLGKLASEFPLDPALAV
MLISSPEFYCSNEILSLTALLSVPQLFNRPAAQRKRADEMKNSFAHADGDHLTMLNVYHA
FKSPAAQENPKQWTHDHFLSFRALQQADNVRLQLKRIMEREEVELISTPFDHKDYYINIR
RALVAGFFMQVAKKDTSGKTYVTVKDNQSVLLHPSTVLGQDSEWVVYNEFVLTSKNYIRS
VTAVKPEWLLEISPNYYDVDSFQKGEVQTSLRRTAQKMQRRSEINGKAGRT
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggccgactccgagcagccaaagaagtcgcgcttcaagcgacagaagaccaatgaccac
cgcagcgacgataaggccaacccgtatctcgcgcacatgaacttcgacaacgaggcgggt
gtcggcctcaatggcggcgcaaatggcaaatcgaatggatcatacaacggcaccgacctg
agcaagtggccgcgatatggcacgaccgcgaagatggctgcgcaggcagaagacggtcca
gacaacccattcaccggcgtgcctctgtcagatcgctactttggcattctcaagtctcgc
cgggacttgccagtgcatgcgcagaggcaggacttcttggacatgtaccagaagtcgcag
atcttggtcttcgttggtgagaccggttccggaaagactacgcagatcccacagttcgta
ctctacgacgacttaccgcagacccaaggcaagatggtggcgtgtacgcagcctcgtcgt
gtcgctgccatgtccgtcgcacagcgtgtcgcacaagagatggacgttgagcttggaggc
gaagttggttacagcattcgtttcgaggacaagacaagtccgaagacgatcctcaagtac
atgacagacggtatgctgctgagagaggccatgaacgatcacgacatgaagcgatacagt
acaatcatccttgacgaggcacacgagagaactctggcgacggatatcctcatgggcttg
ctgaaggaggtggttgcgcggagacctgatctcaagatcattattatgtcggccacgctt
gatgcacaaaagttccagaagtacttcaacaacgcaccattacttgccgtacctggtcga
acacatcctgtcgagatcttctacacaccagagcccgagcgagattatcttgaggccgcg
ctgcgaacagtgctgcagattcacgcctcagagccagaaggtgacattctgctgttcttg
actggtgaagaggagattgaagatgcggcgagaaagatcagcatggaggcagatgagatg
ataagagaagcagatgctggaccactcaaagtctaccccctctacggcacattaccacct
gcacaacagcagagaatcttcgatcctgcaccaccaccatacaagccgggaggcagacct
ggtcggaagtgcatcatttccaccaacattgccgagacatcgctcactatcgacggtatc
gtctacgtcgtggatcctggtttcagcaaacaaaaggtctacaacccacggattcgtgtc
gagtcgctcctcgtctcgcctatcagcaaagcatccgcccaacaacgagctggtcgcgct
ggtcgtacaagacctggaaagtgcttccgactgtatacggaaggtgcctttaagaaagaa
ctcatcgaccagtcgtatcctgagatcctccgatccaacttggccagtacagtgcttgag
ctgaagaagctcggaatcgatgacttggtgcacttcgatttgatggaccctcccgcacca
gagacgctcatgcgagcacttgaggagctcaactatcttgcttgtctcgacgatgaaggt
gaattgaccacattgggaaagctggcgtcagagtttccacttgacccagctctggctgtc
atgctcatttcatcgcctgagttctactgctcgaacgagatcctgtcacttacagcactt
ctttctgtaccgcagctcttcaaccgtcctgcagcgcaacgaaagagagcagatgagatg
aagaactcgtttgcacatgcggacggtgaccacctcacaatgctgaatgtctatcacgcc
ttcaaatccccagccgcacaagagaacccgaagcagtggactcacgaccatttcttgtct
ttccgagccttgcagcaagccgacaacgttcgtctgcagctcaagcgtatcatggagcga
gaagaagtcgagctgatctcaacacccttcgaccacaaggactactacatcaacattcgc
agagcccttgttgctggcttcttcatgcaagtcgcgaagaaagacacatcaggcaagacc
tatgtcactgtcaaggacaaccagagcgtgcttctgcatccttccacggtgctgggtcag
gacagcgagtgggtcgtgtacaacgaattcgtgctcaccagcaagaactacatccgatct
gtcacagctgtcaagccggagtggttgcttgaaatctcgccgaactactacgatgtcgat
agcttccagaagggcgaagtgcagacatcattacggaggacagcgcagaagatgcagaga
cggtcggagattaatggcaaggctggacggacatag
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