Fulvia fulva: CLAFUR5_11965
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Entry
CLAFUR5_11965 CDS
T08195
Name
(RefSeq) ATP-dependent rRNA helicase spb4
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
ffu
Fulvia fulva
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ffu03009
]
CLAFUR5_11965
Enzymes [BR:
ffu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLAFUR5_11965
Ribosome biogenesis [BR:
ffu03009
]
Eukaryotic type
Pre-60S particles
Helicases
CLAFUR5_11965
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Flavi_DEAD
ERCC3_RAD25_C
MHCassoc_trimer
Motif
Other DBs
NCBI-GeneID:
71991843
NCBI-ProteinID:
XP_047767647
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All DBs
Position
10:1277196..1279121
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AA seq
641 aa
AA seq
DB search
MANDSTEKKQPKSFEALTPELSQWILDFTHGMGFARTTPVQAMAIPLLTGNKDLVVEAVT
GSGKTLSFLIPLVERILKSEEPNKKGHVRSIVVAPTKELATQIYDVLRGLLDFHPPSSAV
LTESSQEPVDSDDEEMEDVEKPVIPPGPYAIPQLLVGGRTKLGEDIATFSSLNPNILIGT
PRRLVEVLQSSKVQLKRHWFDLLVLDEADRLLDPNFQPDLQRILDLVPKERRTGLFSASV
SEAVDELVRVGMRYPFKISAKVRSKSGALDKRTPESLKLYHIATKPSLKIPYLKSILETN
QAEKSIVYVSTRAGVDYWSQMLPALLGILVFPIHGDHKSAIRIKNLQRFRDSSKPAILLT
TDVLARGIDIPDIDVVVQLDPPKQPKDFIHRCGRSGRAGKRGMAITFLNEGNEEDYVKYL
AMQGTPLEPYPSLAQLSEQDVNDSIEEMRKVLVQKRELHDRSQKAFVSWVQAYSKTLPSD
IFSIRKIDWPEVGKSWGLLRWPKMPELKRHCPEAREDRSFGLDLPQDFDLNNVAYADKVR
EARRKEIMEAFSRGEKPDLPKKSGGALADMRRRKESAWSNQKDAKAVKESRREKKEVRRK
AESKAKMSDADEVKALELDQLIAKVRAKNQQGEEIFEGFDE
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacgacagcacggaaaagaagcagccaaagtcattcgaagcgctaacaccggag
ctctcacaatggatcctcgacttcactcatggcatgggttttgcccgcaccacaccagtg
caagcgatggctataccacttctgacgggcaacaaggacttggtggtcgaagccgttacc
ggtagcggtaagactctgagctttttgataccgctcgtggagagaatattgaagtcggag
gagccgaacaagaaagggcatgtacgatcgatagtggtggcgccgaccaaggagctggca
actcagatctacgacgtgcttcgaggccttttggatttccatcctccgtcttcagccgtg
cttaccgagtcgagtcaggagcctgtggatagcgatgacgaggaaatggaagatgtcgag
aaacctgtgatacctccaggaccttatgctataccacagcttctggttggcggtcgcacc
aagctgggtgaggatatcgctactttctcgagcctgaatccgaacatattgattggaacg
ccgaggcgtctggtggaggtcctgcaatcgtcaaaagtgcagctgaagaggcattggttt
gacctcctcgtcttggatgaggccgatcgtcttctggatcccaatttccagccagatctt
cagaggatccttgaccttgttcccaaggagcgtcgcactggcttgttcagtgcttcagtc
tccgaggctgtcgatgagctggtccgcgttggcatgcgatatccgttcaagatcagtgcg
aaggtgcgcagcaaaagtggagcactggacaaacgtactccagagtctctcaagctctat
catatcgccactaagccgagtcttaagataccgtatctgaagagcatacttgagaccaac
caagccgagaaaagcatagtatacgtttccacaagagctggagttgactactggagtcaa
atgctaccagcattacttggtatattggttttcccaatacacggtgaccacaaatctgca
atccgaatcaagaacctccagcgctttcgtgattcgtcgaagccagcaattctacttacg
accgatgtactggcacgaggtatcgacattcctgatattgatgtggtggtacaactcgac
ccaccgaaacaacccaaggacttcatccacagatgtgggcgctcaggtcgcgcgggaaaa
cgaggcatggccatcactttcctcaacgaggggaacgaggaggactatgtcaagtatctc
gcgatgcaaggcactcccctcgaaccttatccatcgctagctcagctttcggaacaggac
gtaaatgatagcatcgaggagatgaggaaagtactcgtgcaaaagcgagagttgcacgac
cgatcgcaaaaggctttcgtcagctgggtacaagcctacagcaagaccctgccttccgac
atcttcagcatcaggaaaatagactggccagaagtcggcaagtcctggggtctactgagg
tggccaaagatgcccgagctcaagcgtcattgtccagaagcaagagaagatcgcagcttt
ggcctggatctgccgcaggactttgatctcaacaatgttgcatacgctgacaaagtgagg
gaggcccggcggaaagaaattatggaagctttctctcgcggtgaaaagcctgatctgccg
aagaagagcggaggcgcgctagcagatatgagaaggagaaaagaaagtgcttggagcaac
cagaaagatgcaaaagcggtcaaggagtcgaggagggagaagaaggaagtcaggcgcaaa
gctgagagtaaagcgaagatgtctgatgcggatgaggtcaaggcactagagctggaccag
ctcattgcgaaggtcagggcgaagaaccagcaaggtgaggagattttcgaagggtttgat
gagtag
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