Fulvia fulva: CLAFUR5_12339
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Entry
CLAFUR5_12339 CDS
T08195
Name
(RefSeq) DNA excision repair protein ckn1
KO
K10570
DNA excision repair protein ERCC-8
Organism
ffu
Fulvia fulva
Pathway
ffu03420
Nucleotide excision repair
ffu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
CLAFUR5_12339
09124 Replication and repair
03420 Nucleotide excision repair
CLAFUR5_12339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ffu04121
]
CLAFUR5_12339
03400 DNA repair and recombination proteins [BR:
ffu03400
]
CLAFUR5_12339
Ubiquitin system [BR:
ffu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
CLAFUR5_12339
DNA repair and recombination proteins [BR:
ffu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
CLAFUR5_12339
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
WD40_MABP1-WDR62_2nd
NBCH_WD40
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_WDR11_1st
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_NOL10_N
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
71992217
NCBI-ProteinID:
XP_047766973
UniProt:
A0A9Q8PHQ2
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Position
10:complement(join(3366475..3367627,3367679..3367902))
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AA seq
458 aa
AA seq
DB search
MNTYLLNRQLGSISPLALASAQNNRLLQALAPATDINFALQLPNTTGPRNTSGTKDVAHA
SGVSSIAIDRFEGRYLISAGADSSLAVWDLESGTTGPNGSTTYVPLDNKARTSTTQSLGI
THVSFYPFDSLALLTSGYDHTLRLFSSETLEASASFDIGSIVYSHATSTIASSHLLVACA
SQHPAVRLVDLQSGASTHSLAGHSGSVLTVAWHPKNEHILASGATDGVVRLWDVRRSASS
LGVLDMDDSIGIAGYDGKGTGARRRERGKSHTGAVNGVVWTEDGQYLLSNGHDERMRVWD
MIGGANTLANFGPGLKNATTTVVLPLIAPSHLSGTGKETIFYPNPKEIVSFDMHSGTALN
RLRVRGLPGSQKAADTNVRDPKNRTTSLAWRAHNIELYSAHGDGTIRCWKPRTEEDILAD
KEESNDPIADIDAAERKRKREAFGDIVRDLTSKKITFS
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgaacacatacctcctcaaccgccagttgggctccatcagcccactggcgctggctagt
gcgcagaataacaggctgttgcaggcattagcgccagcaacagacatcaactttgccctt
cagctgccgaatactactggcccgcgaaatacgagtgggaccaaggatgttgcacatgct
tcgggtgtcagcagcattgcaatcgatagatttgagggcagatacttgatctcggcagga
gcagactcgtccctagctgtatgggacctcgaatcaggaacgacgggtcccaatggctcg
acgacatatgtcccactcgataataaagccaggacatccacgacgcaaagtcttggcatc
acccatgtctcgttctacccgttcgacagcctagcgctattgaccagtggctacgaccac
accctgaggctgttctcatcagagactctggaagcgtcggcgtccttcgacatcggctcc
atagtctactcccatgccacatcgaccatcgcctcatcacatcttctcgtagcatgtgcg
tctcagcacccagcagtccgtctggtagacctgcagtccggagccagtacgcattccctc
gcaggccactctggatcagtcttgaccgtagcttggcacccgaagaacgagcatatcctg
gctagcggagctactgatggtgtggtgcgcctttgggatgttcgtcgaagcgccagctct
ctcggtgtcctggacatggacgacagtatcggcatcgcaggatacgacggaaagggcaca
ggagctcgaagacgtgaacgcggcaagtcccataccggagccgttaatggcgtcgtctgg
actgaggatgggcaataccttctatcaaatggccacgacgagcgcatgagagtgtgggac
atgatcggcggcgccaacactcttgcaaacttcggacccggactcaagaacgccaccacc
acagtcgtgctccctctgatcgcacccagccacctctcaggaaccggcaaggaaacaatc
ttctaccccaaccccaaagagatcgtgtccttcgacatgcactcaggcacagcgctgaat
cgtcttcgagtccgcggcctcccaggctcacagaaggccgccgacacgaacgttcgcgat
ccaaagaacagaacgacctccctagcatggcgagcccataacatcgaactctactccgct
cacggcgacggtacgattcggtgctggaaaccacgcaccgaggaagacatcctcgccgat
aaagaagagtccaacgatccaatcgcagacattgacgccgcagagcggaaacgcaaacgc
gaggcgttcggtgacattgtcagggacttgacgtcgaagaaaataacattctcatga
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