Fulvia fulva: CLAFUR5_13167
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Entry
CLAFUR5_13167 CDS
T08195
Name
(RefSeq) Exosome complex exonuclease rrp6
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ffu
Fulvia fulva
Pathway
ffu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLAFUR5_13167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffu03019
]
CLAFUR5_13167
Messenger RNA biogenesis [BR:
ffu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
CLAFUR5_13167
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
71993045
NCBI-ProteinID:
XP_047768057
UniProt:
A0A9Q8PJI5
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Position
11:complement(join(2664809..2667007,2667059..2667412))
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AA seq
850 aa
AA seq
DB search
MEDFNSLEANIKSSLLATIRSANSLGNEDLAFHRSLDSSVGTTLDQQNARLLGLAERLLG
VSTANTELVRPPRLKDIDSVEGNWKAVVDVVDSLLERADTALDEFTGAVKRLSPGIEQAA
PSKPPKVSRIAAALKTQELEKPQLHFDHVPKNDEVLPFKPLLQSKPHAAVPLETSPIASD
EDTQESYAYHLISHSRLGVLDHEDGLKHLFSFSNKASRFEFFFPTSKSLKLRCWNIDPNV
PNRYPHPYQLEIEQYRYPSSVYTISEPIMYQPFESTTATFVDTEEALYEMLEELKQAKEI
AIDLEHHDSRTYIGIVSLMQISTRDKDWVVDTLQPWRRKMQCLNEVFADPGILKILHGAY
MDIVWLQRDLGLYIVALFDTHYASRALGYTGGSLAFLLKKFINFDAQKQYQMADWRIRPL
PQELFDYARSDTHFLLYIFDNMRNELVQRSDFSKPDHEGDKLWDVLQKSTEVALQRYEHP
IYDAELGQGAGGWYKMLSRTPALFSKEQFSVFRAVHKWRDEVAREQDDSTHYVMPNHQVL
SIAKAMPPNRLALLGVAQPTTQTVKLRADELVSVIAKAKEAGKEGPAMMDILNKIEPQAP
RKSAPVQAAPAEATPEKTGPTASASGTASMADYKPSTSLPLRSSTSTFWGSAFDNSAHQK
REMSSTSNVSLAVPLPPLTAEIFANPNEVEAEPPTPEPIPAPAVEVPADDDTFILKERNG
KRKRTIDKFANVEDDGMAANTDEVSLTPVSGRDQEQREKAERKAARKAAKKAEKEAKRNG
EEDSEIEDDTPFDYAAAPSILNPPREPRKSAKERKKEEKQKNPYATSLDAPKGMPRNQKE
GPGRSMTFRN
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggaggacttcaacagcctcgaagcgaacatcaaatcgtccctcctcgcgaccatccgc
agcgccaactcactcggcaacgaagacctcgccttccaccgatcgctcgactcgtctgtc
ggcaccaccctcgaccagcagaatgcgcgtcttctgggtcttgcggaacgtcttctgggc
gtttcgacagcgaacacggagcttgtacgtcctccgcgactgaaagatatcgactcggtc
gaaggcaactggaaggccgtcgttgatgtcgtcgacagcctgctcgagcgcgccgatact
gccttggatgagtttactggcgctgtgaagagattgagtccgggaattgagcaggcggct
ccttccaaaccgcccaaggtctctcgaatcgctgccgcgctcaagacacaggagcttgag
aagccacagctgcacttcgaccacgtgcccaagaacgatgaggtgcttcccttcaagccg
ctcctgcagagcaaaccgcatgctgcagtgccgctggagacttcgcccatcgcttctgac
gaggacacgcaagaatcgtacgcctaccatctcatttctcactctcgacttggtgtgctg
gaccatgaagatggtctgaagcatcttttctctttcagtaacaaagcttcacgcttcgag
ttcttctttcctacatccaagtctttgaaactccgctgttggaacattgatcctaacgta
ccaaacagatacccacacccctaccagcttgaaatcgagcagtaccgatacccgtcgtcc
gtctataccatcagcgaaccgatcatgtaccagcccttcgaatccacgaccgccacattc
gtcgataccgaggaagcactatacgaaatgcttgaagagttgaagcaggcgaaagagatt
gcaatcgatctggaacatcacgacagcaggacatacataggtatagtatcactcatgcag
atcagcacgcgcgacaaggactgggttgtggatacgcttcagccgtggaggagaaagatg
caatgcttgaatgaggtgtttgccgatcctggcatcctcaagatcttgcacggcgcatac
atggacattgtgtggctgcaacgagaccttggactgtacattgtcgcgctcttcgacacg
cattatgcctcacgagcattgggctacactggtggaagtctggctttccttctgaagaag
ttcatcaactttgacgcgcaaaagcagtatcagatggcagactggcggatacggccactt
ccgcaagaattgttcgactacgccagaagcgacacccacttcctgctttacatcttcgac
aatatgcggaatgagctagtgcagaggtcggacttctcaaagccagatcacgagggtgac
aagctgtgggatgtgctacagaagagtaccgaggtcgcattacagagatacgagcacccg
atctacgacgcagaattgggacaaggtgctggaggatggtataagatgctgtcgcgaacc
ccagcactcttctcgaaagagcagttctccgtcttccgcgcagtgcacaagtggcgagac
gaagtggcaagagagcaagacgacagcacgcactatgtcatgccgaaccatcaagtgctg
agcattgccaaggccatgccaccgaaccgactggcattgcttggtgtagcgcagccgaca
acacagaccgtcaagctgagggcggatgagctggtcagtgtgattgcgaaggcgaaggag
gcaggaaaggagggaccagcaatgatggacattctcaacaaaatcgagccgcaagcaccg
cggaaatcagcgcctgtacaagcagccccagcagaagcaacgccagaaaagacgggaccc
actgcaagtgcttctggcacagcttctatggccgactacaaaccttcgacatcactcccg
ctgcgaagttcaacttcaaccttctggggttcagctttcgacaacagcgcgcatcaaaag
cgggagatgtcatcgactagcaacgtttccctggctgtacccctaccaccactaacagca
gagatcttcgccaatccgaacgaggtggaagcggagccgccgacaccagaacctattcct
gctccagctgtggaagtgccggctgacgatgacacttttatcctcaaagagcgcaacggg
aagcgaaagcgcacgatagacaagttcgcaaatgtggaggacgacggcatggcagcaaac
acggacgaagtgtcattgactccagtcagtggtcgcgaccaagaacagcgtgagaaggca
gagcgaaaagcagcgaggaaggcggcgaagaaagccgaaaaagaggcgaagcggaacggg
gaggaagatagcgagatcgaggacgacacaccgttcgactatgctgcagcgccgagcata
ctcaacccaccgcgggagcctcgaaagagtgcgaaggagcgcaagaaggaggagaagcaa
aagaatccgtatgctacgtcgctagatgcgccaaagggtatgccgaggaatcagaaggag
ggcccgggacggagtatgacttttaggaattga
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