Fulvia fulva: CLAFUR5_13830
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Entry
CLAFUR5_13830 CDS
T08195
Name
(RefSeq) ATP-dependent RNA helicase mtr4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ffu
Fulvia fulva
Pathway
ffu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLAFUR5_13830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffu03019
]
CLAFUR5_13830
03041 Spliceosome [BR:
ffu03041
]
CLAFUR5_13830
03009 Ribosome biogenesis [BR:
ffu03009
]
CLAFUR5_13830
03016 Transfer RNA biogenesis [BR:
ffu03016
]
CLAFUR5_13830
Enzymes [BR:
ffu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CLAFUR5_13830
Messenger RNA biogenesis [BR:
ffu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CLAFUR5_13830
Spliceosome [BR:
ffu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CLAFUR5_13830
Complex C
U4/U6.U5 tri-SnRNP related factors
CLAFUR5_13830
Ribosome biogenesis [BR:
ffu03009
]
Eukaryotic type
Pre-60S particles
Helicases
CLAFUR5_13830
Transfer RNA biogenesis [BR:
ffu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CLAFUR5_13830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ATPase_2
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
71993708
NCBI-ProteinID:
XP_047768512
LinkDB
All DBs
Position
12:complement(join(1703309..1703489,1703542..1705883,1705999..1706712))
Genome browser
AA seq
1078 aa
AA seq
DB search
MADEMFDVFDEKATAKSKGKKSKKRSLNGDVKRAEQQQNGDANMTDAHDFAPPATTAPAA
PADDDVASEDADRGQKRRRRDEEPEPVVTDSFDTTQSRQVAAAAGLQAEKEETAVVLQHQ
VRHQVSLPPDCDYVPISQHKRPSEPARVWPFQLDPFQEVSIASIERNESVLVSAHTSAGK
TVVAEYAIAQCLKNNQRVIYTSPIKALSNQKYREFQADFGDVGLMTGDVTINPTATCLVM
TTEILRSMLYRGSEIMREVAWVVFDEVHYMRDKSRGVVWEETIILLPDKVRYVFLSATIP
NAMQFAEWITKTHNQPCHVVYTDFRPTPLQHYFFPAGADGIHLVVDEKGVFREENFNKAM
ATIAEKAGDDGSDPMAKRKGKGKDKKVNKGGKKDGPTDIYKIVKMIMMKNYNPVIVFSFS
KRDCENYALQMSQLAFNDESEKAMVSKVFNSAIEMLSDEDKELPQIQHLLPLLRRGIGIH
HSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGISLRWVTPS
EFIQMSGRAGRRGLDERGIVIMMIDEKMEPGVAKEIVRGEQDKLNSAFYLGYNMILNLMR
VEGISPEFMLERCFFQFQNAASVSGLEKQLMELEQKRLEMAIENEPEIKEYYDLRKNLTN
YANEMKAVITHPQYLTKFLQQGRLVKVKYKDHDFGWGAVVNFVSVKPGKGQKQEDIPSSA
SVVVDVLLNVAADVTPPPPGSKLSDDLPPGVRPPGPGEKGKMEVAPIMNGTIDSVGHLRV
FLPNDLRTQEQRNTVRKALEEIARRFPDGIAILDPIENMGIEDDGFKKLLRKIEVLEHKL
LSSPLHKDERLPELYDQYNAKVELSNEIKALRKKMSDALSVLQLDELKNRKRVLRRLGFV
NDADVVQLKARVACEISTGDELVLSELLFNRFFNELTPEQCAAVLSCFIFEEKSEEKGAL
KEELAKPFREIQAQARQVAKVSMESKVVVNEEEYLQSFKPELMEVVYAWTHGASFAAICK
MTDVYEGSLIRLFRRLEELLRQVAQASKVMGSDELEQKFEVALTKVRRDIVAAQSLYL
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgaaatgtttgacgtcttcgacgagaaggcgaccgctaaatcgaagggcaag
aagagcaagaagcgatcactcaatggcgatgtcaaacgcgcagaacagcagcagaatggc
gatgcgaatatgacagatgcacacgactttgcgcctccagccacgacagcaccggcagcg
ccagcagacgatgatgtcgcttcagaagatgccgaccgaggacagaagcgacgacgccgc
gatgaagaacccgagcccgtagtcaccgactcatttgacaccacacaatcgagacaagtt
gccgcagcagcaggcctgcaagcggagaaagaggagaccgcagtagtactgcagcatcaa
gtgcgccatcaagtatcactacctcccgactgcgactacgtccccatatcacaacacaag
cgcccgtcggagcctgcgcgggtatggcctttccaactcgatcctttccaagaggtctca
atagcctcgatagagcgcaacgagagcgtactagtgtcggcgcacactagtgcagggaag
acggtggtggcagaatacgcgatcgcccagtgtctcaagaacaaccagcgagtcatctac
acaagtcctatcaaggcgctaagcaaccagaaataccgcgagtttcaggctgactttggc
gatgttggccttatgactggagatgtgaccatcaatcccacggcaacatgtttggtcatg
acgacggagattctacgatctatgttgtaccgcggtagtgagatcatgcgcgaagtcgcc
tgggtggtctttgacgaggtccattacatgcgcgacaagtcgcgtggtgtggtatgggaa
gagacaatcatcctactccccgacaaggtccgctacgtcttcctctccgccacgataccc
aacgctatgcaattcgccgagtggatcacaaagactcacaaccagccctgtcacgtcgtc
tacaccgatttccgacctacacctctccagcactacttcttcccagcaggcgcagacggc
atacatttggtcgtggatgagaagggtgtattccgagaagagaacttcaacaaagccatg
gctaccatcgcagaaaaagcgggagatgatggctcagatccaatggctaagcggaaaggc
aaaggcaaagacaagaaggtgaacaagggcggcaagaaggatggaccgacggacatctat
aagatcgtgaagatgatcatgatgaagaactacaacccagtcatcgttttctccttctca
aaacgagattgtgaaaactatgctctgcaaatgagccagctcgcgttcaacgatgagtct
gagaaggcgatggtgtcgaaagtcttcaacagtgcgattgagatgctgtcggacgaggac
aaagagctgccccagatacaacatcttctacccctcctgcgacgaggtatcggcattcat
cactctggtctgctcccgatcctgaaggagacgatcgagattcttttccaggaggggttg
atcaaggtactcttcgcaaccgagaccttctcaattggcctcaacatgccggcaaagact
gttgtgttcacgtcggtgcgcaagttcgacggcatttcactccgttgggtcacgcccagt
gagttcattcagatgtctgggcgagctggtcgtagaggtctcgacgagcgtggtattgtt
atcatgatgatcgacgagaagatggagcccggtgtggcgaaggagattgtacgcggtgag
caagataagctcaacagtgctttctatctgggctacaacatgattctcaacctcatgcga
gtcgagggtatcagtccagagttcatgctcgagcgctgtttcttccagttccagaacgcg
gcatcagtttccggcctggagaagcagctcatggagcttgagcaaaagcgacttgagatg
gccatcgagaacgaacccgagatcaaggagtactacgacctgcgaaaaaacctcacaaac
tacgcgaacgagatgaaggccgtcatcacacatccccaatacctcaccaagttcctgcaa
caaggtcgacttgtgaaagtcaagtacaaggatcacgacttcggctggggtgccgtggtc
aactttgtgagtgtcaaaccaggaaagggccagaagcaagaggatattccatcctcagca
tcagtcgtggtcgatgtcctcctgaacgtcgcagcagacgtgacgccaccaccgcctgga
tccaagctcagcgacgatctaccgccgggagtacgaccacctggacctggagagaagggc
aagatggaggtcgctcccatcatgaacggcacaatcgacagtgttggccacctccgggtg
ttcctgcctaacgacttgcgcacgcaggagcaacgcaacactgtccgcaaggcgcttgaa
gagatcgcgaggcgcttccctgacggcattgccatcctcgacccgattgagaacatgggc
attgaagatgatgggttcaagaagcttctgcgcaagatcgaagtgcttgagcacaagctg
ctgtcttcaccactgcacaaagacgagcgactacccgagctgtacgatcagtacaacgcg
aaggttgagctgtcaaacgagatcaaggcgcttcgcaagaagatgtctgatgctctgtca
gttctccaacttgacgaactcaagaaccgcaagcgtgtgctgcgacgactcggctttgtc
aatgacgccgatgtggttcagctcaaggctcgtgtcgcttgcgagatctcgactggagat
gagctcgtgctgtcagagcttctcttcaaccgtttcttcaacgagctcacacccgagcaa
tgtgccgctgtcctttcatgcttcatcttcgaggagaagagtgaagagaagggcgccctc
aaggaagagctcgcaaaacccttccgagaaattcaggcgcaagcgcgacaggtggcaaag
gtcagcatggagagcaaggtggtggtcaacgaggaagaatatctacagtcgttcaagccg
gaactcatggaagttgtgtatgcttggacgcatggcgcgagcttcgcagcgatctgcaaa
atgacagatgtctacgaaggctcgctcatccgcctcttccgccgacttgaggagttgcta
cggcaggtcgcgcaagcttcgaaggtcatgggctccgatgagctcgagcagaagttcgag
gtcgcgctcacgaaggtgagacgtgacatcgtcgctgcgcagtccttgtacttgtag
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