Flavobacterium flavipigmentatum: LNP22_01205
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Entry
LNP22_01205 CDS
T10330
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ffv Flavobacterium flavipigmentatum
Pathway
ffv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNP22_01205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffv03019
]
LNP22_01205
03400 DNA repair and recombination proteins [BR:
ffv03400
]
LNP22_01205
Enzymes [BR:
ffv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LNP22_01205
Messenger RNA biogenesis [BR:
ffv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LNP22_01205
DNA repair and recombination proteins [BR:
ffv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LNP22_01205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
TrmB
DnaD_N
HTH_24
CTD12
Motif
Other DBs
NCBI-ProteinID:
UFH38908
LinkDB
All DBs
Position
241421..243316
Genome browser
AA seq
631 aa
AA seq
DB search
MSKAQEILLKYWKHDRFRPLQEEIIDSVLDGQDTFALLPTGGGKSICFQVPAMMQDGICL
VISPLVALMKDQVANLQKREIKAIALTGGIHTEEIIDLLDNCQYGNYKFLYLSPERLQSD
WILERIKNLPINLIAIDEAHCVSQWGHDFRPAYLKISELKKHFPKIPFLALTATATPRVI
EDIKTELGLKTPVLFQQSFERKNIAYMVFEVEDKLYRTEQILKKNPQPSIIYVRNRKSCL
NMSTQLQSLGFKATYYHGGLSAKEKDKNMQLWMSEQVQVIVATNAFGMGIDKDNVKTVIH
TQLPENIENYYQESGRAGRNGEKAFAVLLTNPSDSNQSEQQFLSILPDKKFLNAIYIKLC
NYFQIAYGEGLDDSFSFKLNHFCQKYDFPTLKTYNALQFLNQQGIITMSQEFSEKITMQF
LIESKEVIRYMSLNPNDEEIILAILRTYPGIYEMKTPFNLSLIAKKSNHTEQQVSGVLEK
LKEKDIIDYKAKNNDATILFNEVREDNLTINRVSKYLEKQNQLKKDQLLSVLYYVKEQKT
CKNRLILDYFGEKTTENCGVCSYCIRQKGKISDADSVPDKILLLLKNASLTSREIQTKIK
MDAGDVILALQELLENNYIIIQPNNTYTLKL
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaagcgcaagagattcttttaaaatactggaaacacgaccgttttaggccactg
caggaagagattatcgactctgttttggatggtcaggacacttttgctttgctgcccacc
ggcggcggaaaatcgatttgttttcaggttcccgccatgatgcaagacggaatctgcctg
gtaatttcgcctttggtcgctcttatgaaagatcaggtagcaaatttgcaaaagcgtgaa
ataaaggctatcgcgctgacaggcggcattcatacagaagaaattattgacctgctagat
aattgtcaatacggaaattacaagtttttatacctttcgccagagcgattgcaatcagat
tggattctggaacgcattaaaaaccttcctatcaatttgattgccattgatgaagcacat
tgtgtttcgcagtggggacacgattttcgcccggcttatttgaagatttcagaacttaaa
aaacattttcctaagattccgtttttggctttgaccgctaccgcgactcccagagtgatt
gaagatatcaaaactgagttaggattgaaaacacctgtactttttcagcagtcttttgaa
agaaaaaatatcgcttacatggtttttgaagtcgaagacaagctgtaccgaacagaacag
attttgaagaaaaatccgcagccttctattatatatgtacgaaatagaaaatcgtgcctg
aacatgtcgacacaattacagtctttgggttttaaagcaacttattatcatggcggcctt
tcggctaaagaaaaagacaaaaatatgcaactgtggatgtccgaacaagtgcaagtaatc
gtagctacaaatgccttcgggatgggaattgacaaagacaacgtaaaaaccgttattcat
acccaacttccggaaaacatcgaaaattattatcaagaatctggaagagcgggacgtaat
ggcgaaaaagcgtttgctgttttactgacaaatccctcagacagcaatcaatctgagcag
cagtttttgagcattttgcccgacaaaaagttcctaaatgcgatttatatcaaactttgc
aattattttcagattgcttatggcgaaggtctagacgattctttttcttttaaactgaat
catttttgccaaaaatatgactttccgacactaaaaacgtataatgcgttacaatttctg
aatcagcaaggcattatcaccatgtctcaggaattttcggaaaaaattacaatgcagttt
ttaattgagtctaaagaagtcattcggtacatgagcctgaatccgaatgacgaagaaatt
attctggccattcttcgtacctatcctggaatttacgaaatgaagactccttttaatctt
tcgcttattgcgaaaaaatccaatcataccgagcaacaagtgagcggagttttagaaaaa
ttaaaagaaaaagacatcatcgattataaagcaaaaaataacgatgccacgatattattt
aatgaagttcgggaagacaaccttaccatcaaccgagtttctaaatatttggaaaaacaa
aatcaattaaaaaaagaccagcttttatcggttctttattatgttaaggagcaaaaaacc
tgtaaaaacagattgattttggattattttggagaaaaaactaccgaaaattgtggtgtc
tgctcctattgcattaggcaaaaaggtaaaattagcgatgccgattcggttcctgataaa
attttgcttttactaaagaatgcatccctgacttcgagagaaattcaaaccaaaataaaa
atggatgccggtgacgttattctggcacttcaggaattattagaaaacaattacattatc
atacaacccaataatacatacactttaaaattataa
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