Flavobacterium flavipigmentatum: LNP22_01725
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Entry
LNP22_01725 CDS
T10330
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ffv Flavobacterium flavipigmentatum
Pathway
ffv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNP22_01725 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffv03019
]
LNP22_01725 (recQ)
03400 DNA repair and recombination proteins [BR:
ffv03400
]
LNP22_01725 (recQ)
Enzymes [BR:
ffv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LNP22_01725 (recQ)
Messenger RNA biogenesis [BR:
ffv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LNP22_01725 (recQ)
DNA repair and recombination proteins [BR:
ffv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LNP22_01725 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
UFH39007
LinkDB
All DBs
Position
complement(351777..353969)
Genome browser
AA seq
730 aa
AA seq
DB search
MNSNEIEIHKELKKYFGFSQFKGLQEQVITSILGKKNTFVIMPTGGGKSLCYQLPALIQD
GTAIVVSPLIALMKNQVDAIRSLSSENGIAHVLNSSLTKTEITQVKKDITSGLTKLLYVA
PESLTKEEYVAFLQSVPISFVAIDEAHCISEWGHDFRPEYRNLKNIIKQLGSVPIIGLTA
TATPKVQEDILKNLEMSDATTFKASFNRPNLYYEVRTKTKNIESDIIRFIKQHKGKSGII
YCLSRKKVESIAEVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGID
KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMSGKPVAEQE
IGFALLQEVVAYAETSMSRRKFLLHYFGEEFPDDGDGADMDDNVRNPKSRIEAQDQVVKL
LEIVRDTKHIYKSKELVYTLIGRVNAVIKAHKTDTQSFFGSGADHDEKYWMALLRQVLVT
GYLSKDIETYGIVKITQNGLDFIKKPVSFMMSEDHEYNESEDDAIVTAAKSSGTADEVLM
GMLRELRKKVAKKLGVPPFVVFQDPSLEDMALKYPISLTELYNIHGVGEGKAKKYGGDFI
TLINRYVEDNDIIRPDDLVVKSTGVNSANKLYIIQNIDRKLSLNDIASAKGLTMDALIKE
MEQIVYAGTKLNIKYWVDDMLDDDQQEEIHDYFMESESDKIEDALKEFDGDYDIDELRLM
RIKFISEVAN
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaaacgaaattgaaatacacaaagaattaaagaagtatttcggctttagccaa
tttaagggattgcaggagcaggtcataacaagtatcttaggtaaaaagaatacgtttgtg
attatgccaactggtggtggaaaatctctttgttatcaattgcccgctttaattcaagat
ggaacagcaatagttgtttctcctttgattgctttgatgaaaaatcaggtagatgctatt
cgaagtctttcttcagaaaatggcattgcccatgttttaaattcttctcttaccaaaacc
gaaattactcaggtaaaaaaagatattacttctggtttgacaaagcttttgtatgttgct
ccagaatctttaactaaagaagaatacgtggctttcttgcaaagtgttcctatttctttt
gtagccatcgacgaagcgcattgtatttcagaatggggtcatgattttagaccggagtac
agaaatctgaaaaatattatcaagcaattaggaagtgtacccattattggccttaccgca
actgcaacgccaaaagttcaggaagatattcttaaaaatcttgaaatgtcggatgcaacc
acttttaaagcatcctttaacagacctaatttatattacgaagttcgtactaaaactaaa
aatatagaatcggatattattcgatttatcaaacaacacaaaggcaaatctgggattatt
tattgcctgagccgcaaaaaagtcgagtcaattgctgaggttttacaggtaaacggtatt
agcgcggttccttatcacgcaggtttagatgccaaaacaagagccaaacatcaagacatg
tttttgatggaagatgtagacgttgtagtcgctacaatagcgtttgggatgggaattgat
aagccagacgttcgattcgtgattcatcatgatattccaaaatcactggaaagttattat
caagaaactggtcgtgcaggtcgtgatggaggagagggacattgcttggcatattactcg
tataaagatgtcgaaaaactagaaaaattcatgtctggaaaacccgttgcagagcaagaa
ataggttttgctttattgcaggaagtggtggcttacgccgaaacttcgatgtcacgccgt
aaatttctgttgcattattttggtgaagaatttccggatgacggagatggtgccgacatg
gatgataacgttcgcaatcctaaaagccgaatcgaagctcaggatcaagtggttaaattg
ttagaaattgttcgcgataccaaacatatttataaatctaaagaacttgtttatacctta
attggacgcgtgaatgcagtgattaaagctcataaaacagatacgcaatctttttttggg
tctggtgccgatcatgacgaaaaatattggatggctttgcttcgccaagttttggtgact
ggttatttatctaaggatatcgaaacttatgggattgtaaaaatcacccaaaacggattg
gactttatcaaaaaaccagtttcgtttatgatgtctgaagaccacgaatataacgaatct
gaagatgatgcaatagtaacagccgcaaaatcatccggaacagccgatgaagtgttgatg
ggaatgttgcgagaattacgaaaaaaagtagccaaaaaactcggagtaccaccatttgtg
gtctttcaggatccttcgcttgaagatatggctttaaaatatccgattagcttaaccgag
ttgtacaacattcacggtgttggagaaggaaaagctaaaaaatacggaggcgattttata
actttaattaatcgctatgtagaggataacgatattattcgcccagacgatttggtcgta
aaatctaccggagtaaattctgccaacaaattatacatcatccaaaatattgatagaaaa
ttatcgcttaacgatattgcttctgccaaaggtcttacaatggatgctttgattaaagaa
atggagcaaattgtctatgcgggtactaagctcaatataaaatattgggttgatgacatg
ctcgatgatgatcagcaagaagaaattcatgattattttatggaatcagaatccgataaa
atcgaagatgctttaaaagaatttgatggggattatgatattgatgaattacgcttaatg
cgaataaaatttattagcgaagtagcgaattag
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