Flavobacterium flavipigmentatum: LNP22_05980
Help
Entry
LNP22_05980 CDS
T10330
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ffv Flavobacterium flavipigmentatum
Pathway
ffv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ffv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LNP22_05980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ffv03400
]
LNP22_05980 (mfd)
Enzymes [BR:
ffv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LNP22_05980 (mfd)
DNA repair and recombination proteins [BR:
ffv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LNP22_05980 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UFH39822
LinkDB
All DBs
Position
1283538..1286903
Genome browser
AA seq
1121 aa
AA seq
DB search
MSKNALYSMYDNLPKTQQIATQLLEESSVKMHLNGLLGSAFSFIIRAVFKKAELPFLVVL
DNKEEAAYYLNDLEQMIGEQDVLFYPGSFRRPYEIEETDNANVLLRAEVLNRINSRKKPA
IIVTYPEALFEKVVTRQQLDKNTLKVALNDKISIDFINEVLFEYEFKRVDFITEPGEFSV
RGGIVDVFSFSNDHPYRIEFFGNEVDSIRSFDVETQLSVETHKKITIIPNVENKIFQENR
ESFLDYISEKTVIFIQNTDGLFSQLDKQFARAEEAFAKLSGEIKHATPEQLFLNQTSFIK
RALDFSIVELACKPIFRTTKKFDFHIQPQPSFNKQFDLLLNNLSENHFNGFKNYLFCSNE
AQAKRFHDIFETLDEANSENIRKQYHTVVLPLYQGFVDEENQITAYTDHQIFERYHKFNI
KNGYSKKHNITLKELTALSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIV
YVSIHSLHKISKYNGKDGTPPKIYKLGSNAWKILKQKTKARVKHIAFNLIQLYAKRRLEK
GFQFAPDSYLQNELESSFIYEDTPDQTKSTQEVKADMESDRPMDRLVCGDVGFGKTEVAI
RAAFKAVDNSKQVAVLVPTTILAYQHYRTFTERLKDMPVSVGYLNRFRTAKQKAQTLKDL
AEGKLDIVIGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPI
PRTLQFSLMAARDLSVITTPPPNRYPIETNVVSFNEEVIRDAISYEIQRNGQVFFINNRI
ENIKEVAGMIQRLVPNARVGIGHGQMEGAKLEELMLGFMNGDFDVLVATTIIESGLDVPN
ANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTEDARKRIQALEQFSEL
GSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEEN
NIETKEYVKDLQIDTDFELLFSDEYINNVTERLSLYNELGSVKNEAELVIFQNKLIDRFG
PMPPRANALMNSIRIKWIATNIGIEKLVMKKGKMIGYFVSDQQSDYYQSSKFRKVLQFVQ
KQSSLCTMKEKQTPNGLRLLLTFDNVKSTKRALELMEMLGE
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaaacgccttatattcgatgtatgataatttgcctaaaacacagcaaattgcc
acacaattactagaagaaagttctgtaaaaatgcatcttaacggtttgttgggatctgca
ttttcatttataattcgtgcggtttttaagaaagccgaattgccttttttggtcgtttta
gacaataaagaagaagctgcttattatttgaacgatttggaacaaatgataggagaacag
gatgttttgttttatccgggctcgtttcgtcgtccttacgaaatagaagaaacggataac
gctaatgttttgcttcgtgctgaggttttaaaccgaataaattcgcgtaaaaaaccagcg
attatagtcacgtatccagaagctctttttgaaaaagtcgttacccgtcagcaattggac
aaaaacactttaaaagtggcgctgaatgacaagatttcgatcgattttatcaatgaagtt
ttgtttgaatatgaatttaaaagagtcgattttattacagaaccgggcgaattttcagtt
cgtggaggaattgtcgatgttttctctttttcgaatgatcatccgtaccgaattgaattc
ttcggaaatgaagtagacagtatcagaagttttgatgttgagacgcaattgtctgtcgaa
acacataaaaaaattacgattatccccaatgtcgaaaacaaaatatttcaggaaaaccgc
gaaagtttcttagattatatttctgagaaaacagttatttttattcaaaataccgacggt
ctttttagtcagttagacaaacaatttgcaagagccgaagaagcttttgcgaaactatcg
ggagaaataaaacacgcgacaccagaacaattgttcttaaatcaaacgtcgtttatcaaa
cgcgctttagatttttctattgtcgaactggcgtgtaaacccatcttcagaacaaccaaa
aaatttgattttcacattcagccacagccttccttcaacaaacaatttgatttgttattg
aataatttgagcgagaatcattttaacggttttaaaaattatttattttgttcgaatgaa
gcacaggcaaagcgttttcatgatattttcgagactttagacgaagccaattcagagaac
atccgaaaacaatatcacaccgtcgtattgcctttgtaccaaggttttgttgacgaagaa
aatcaaattacagcctacaccgatcatcagatttttgagcggtaccataaatttaatata
aagaacggctattcaaaaaagcacaatatcacgctaaaagagcttactgcgctttcggtt
ggcgattatgtaacacacatcgatcacggaattggtaagtttggaggcttgcaaaaaatt
caggtggaaggcaaaactcaggaagccatcaaattggtgtatgccgataatgatattgtg
tatgttagcattcattcgcttcataaaatttcaaaatacaacggaaaagacggaacgccg
cctaaaatctacaaattaggttcgaatgcctggaagattttaaaacaaaaaaccaaagca
cgcgtcaaacacattgccttcaatttgattcagttgtatgcaaaacgccgccttgaaaaa
ggttttcagtttgcgccagatagttatttgcaaaacgagctcgaaagttcatttatttac
gaagacacaccggatcaaaccaaatctacacaagaagtaaaagccgacatggaaagcgat
cgcccaatggatcgcctggtttgcggcgatgtaggtttcgggaaaacagaagttgctatt
cgtgctgcttttaaggctgtcgataatagcaaacaagttgccgttttggttccgaccacg
attttggcgtaccagcattacagaacttttacggaaagattaaaagacatgccggtttct
gttggttatttaaaccgatttagaaccgccaaacaaaaagcgcaaaccttaaaagattta
gccgaaggaaaacttgatattgtcatcggaacgcatcaattggtcaacaaaaatgtcgtt
tttaaagaccttggtttgttgattgtggatgaagaacaaaagtttggagtaaacgtaaaa
gacaaacttaaaaccattgcggcaaatgtagatacactaaccttgacggcaacgccaatc
ccgagaacacttcagttttctttgatggcagcgcgcgatttatctgtaattacaacgcct
ccgccgaatcgttatcctatcgaaaccaatgtggttagttttaatgaagaagtaattcgt
gatgcgatttcgtatgaaattcagcgtaacggacaggttttctttatcaataaccgtatc
gaaaacataaaagaagtggcaggaatgattcagcgtttggtacccaatgcgagagtcgga
attggtcacggacaaatggaaggcgccaaactcgaagaattgatgttgggcttcatgaac
ggtgattttgatgttttggtggccaccaccattatcgaaagtggtttggacgtgcctaat
gccaatacaattttcatcaacaatgccaacaatttcggattgtcagatttgcatcaaatg
cgtgggcgagtgggtcgaagcaataaaaaagcattctgttattttatctgtccgccctat
tctgcaatgacggaagatgcccgaaaacgaattcaggctttggaacaatttagtgaattg
ggcagtggtttcaacattgcgatgaaggatttggaaattcgtggagcaggagatttatta
ggcggagaacaaagcggatttattaacgagattggctttgatacctaccaaaaaatcatg
aacgaagccatcgaggaattaaaagaaaacgaatttaaagatttatatcccgaagaaaat
aatattgaaacaaaggaatacgtaaaagatttacaaattgataccgattttgagttgttg
ttttctgatgaatatatcaataatgttactgagcgtttgagtttgtacaacgagttgggt
tctgtaaaaaacgaagccgaattggtgattttccaaaacaaattaatcgatcgttttggg
ccaatgcctccgcgcgccaatgcgttgatgaacagcattcgtatcaaatggattgcgacc
aacatcggaattgagaaactggtcatgaaaaaaggcaaaatgattggctattttgtatcc
gatcagcaatctgattattaccaatcttcgaagtttagaaaggtgttgcaatttgtacaa
aaacaaagcagcctttgcactatgaaagaaaaacaaacaccaaatggtttgcgactttta
ttgacgtttgacaatgtaaaatcgaccaaaagagcgttagaattgatggagatgttgggg
gagtaa
DBGET
integrated database retrieval system
