Flavobacterium flavipigmentatum: LNP22_06475
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Entry
LNP22_06475 CDS
T10330
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ffv Flavobacterium flavipigmentatum
Pathway
ffv03030
DNA replication
ffv03430
Mismatch repair
ffv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ffv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LNP22_06475 (dnaE)
03430 Mismatch repair
LNP22_06475 (dnaE)
03440 Homologous recombination
LNP22_06475 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ffv03032
]
LNP22_06475 (dnaE)
03400 DNA repair and recombination proteins [BR:
ffv03400
]
LNP22_06475 (dnaE)
Enzymes [BR:
ffv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LNP22_06475 (dnaE)
DNA replication proteins [BR:
ffv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LNP22_06475 (dnaE)
DNA repair and recombination proteins [BR:
ffv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LNP22_06475 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
UFH39917
LinkDB
All DBs
Position
1405043..1409581
Genome browser
AA seq
1512 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGKLIEHQDYLVKPDGFNIPY
DAERIHGISTELAEADGITLAEVLEKFNIALSKTKFIVGQNLGFDVNIMGAEFHRAGVES
PMSAMPVLDTCTEVTASLLKLPGGRGGKFKLPTLTELHSYLFNKPFAEAHNATADVEATT
RCFLELIRREIFTKEELDVPKDYFKEFQERNPQEFPLIGLKHINLKAASDKIREQLRALE
SVDKQTTVSDSDRADFKAAKYAHLHNHTQFSVLQSTIGIGNIVAATAKNGMPAVAMTDTG
NMMGAFHFVSAVMNHNKAASAKNKALVEAGEEPSETEMKPIVGCEFNVCDNHLDKSKKDN
GNQVVLLAKNKRGYHNLAKMSSIAFTDGFYYVPRIDRNVIQKYKEDIMVLSGNLYGEIPS
KILNIGENQAEEAVIWWKEQFGEDFYLEVMRHNQEDENRVNKTLIEFSQKHNVKLIATNN
TYYLNKEDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYYKSSEEMKKLFADIPE
AIINIQEIVDKVEIYSLYRDVLLPKFDIPEEFIVPEDEADGGVRGENKYLRHLTMVGAKK
RYGEISEAIQERLDFELLTISNSGYPGYFLIVQDFIAEARNMDVSVGPGRGSAAGSAVAY
CLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGKNQVAQIIT
YGKMATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFISESEDEVKKALRSDE
FDNVKELIAIANEGDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNFVPVTTAKDS
DLYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIDLNPDEFPIDDPETYE
LFQRGETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEE
IKYDLDACEEYLGETYGITVYQEQVMLLSQSLADFTKGEADVLRKAMGKKQKDVLDKMKP
KFVEQAAAKGHDAKILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHFPAEYMAA
VLSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNDNYAVRFGMGAIKGVGSGA
VATIVENRKDGRYKSIFDLAKRIDLRAANKKAIENLALAGGFDSFEGTTRAQYFHDEGDG
VTFYEKAIRYGSKFQENENSSQVSLFGETSEVQIAEPIVPPCEDWSTMEKLAKEKEVVGI
YISGHPLDDFRFEMKYFCNARLEALKSMEQHVGKNLTFAGIINNVQHRVSKNGKGWAMFN
LEGYDESYEFRIFNEEYLKFRHFLIQNNFAHIKVLIKDGWVNHDTGKKSEPRLQFVEVKQ
LQDVLETFAKKLVVLLNIQDLKTEFIHKLSDLFSQNKGDNSVTFEIMELEKIKRLVAIET
TNDFTETEDAIFTEESENDEAIVGDTKIQEVNEVEEINVVTKLSMPSRRVKVKISQELLA
ELEKMQINFKLN
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgtacttaatattcgatactgaaactactggattaccaaaacgttgggacgctccaata
accgattctgataactggcctcgctgtatccagatcgcctggcagttgcatgacgagatg
ggaaaattgattgagcatcaggattatttggtaaaacctgacggatttaatattccgtat
gacgcagaacgtattcacggaatttcgactgaattggctgaagccgatggaattacgctg
gccgaagttttggagaaattcaatattgctttaagcaaaaccaaatttattgtaggtcag
aatttaggttttgatgtgaatattatgggagccgaatttcatcgtgcgggagtggaatct
ccaatgagtgcgatgccagttttggacacctgtaccgaagtgacagcttcattattaaaa
ttgcctggaggtcgtggaggtaagtttaaattaccaactttaacagagttacatagttat
ctttttaataaacctttcgcggaagcgcacaacgcaacggccgatgttgaggcaaccacg
cgttgttttttggagttaattagaagagaaatttttaccaaagaagaactagatgttccg
aaggattattttaaggaatttcaagaaagaaatccacaggaatttccattaattggttta
aaacacatcaatttaaaagcggcttcggataaaatcagggagcagctgagagccttagaa
tctgttgacaaacaaactacggtttcagattctgacagagcagattttaaagcagcaaag
tacgcgcatttacacaatcatacgcagttttcggttttacaatcgactatcggaattggt
aatatcgttgcggctacggcaaaaaacggcatgccagcagttgccatgaccgatactgga
aatatgatgggggcttttcactttgtgagtgccgtaatgaatcataataaagcggcttct
gccaaaaataaagctttagttgaggcgggcgaagaaccttctgaaaccgagatgaagcca
attgtgggctgcgaatttaatgtttgtgacaaccatttagataaaagcaaaaaagacaat
ggtaatcaggttgtgttgttggccaaaaacaaaagaggttaccataatctggcaaaaatg
tcgtcaatcgcttttacagacgggttttattatgttccgaggattgatcgaaatgttatt
caaaaatataaggaagatatcatggtgttgtcgggaaatttatacggagaaattccgagt
aaaatcctaaacatcggtgaaaaccaggctgaagaagcggtaatttggtggaaagaacag
tttggcgaggatttttatctggaagtgatgcgtcacaatcaggaagatgaaaatcgtgta
aacaaaaccttgattgagttttcgcagaaacacaatgtcaaattaattgcgacaaacaat
acctattatttaaataaagaagacgccaatgcccacgatattttgttgtgtgtaaaagac
ggagaaaaacaggcaacgcctattggtcgtggtcgtggttatcgttacggattgcccaat
caggaatattattataagtcatcggaagagatgaaaaaactctttgccgatatacccgaa
gccattatcaatattcaggaaatagtagataaggtcgaaatttactcgctttatcgagat
gtattgcttccaaaatttgatattccggaggagtttatagttccagaagatgaagccgat
ggcggtgttcgcggggagaataaatatttgcgacacctgacaatggtgggggctaaaaaa
agatatggagagattagcgaagcgattcaggaacgtttggattttgagttattaacgatt
tcgaattcaggatacccgggttactttttgatcgttcaggattttatcgccgaagcccga
aatatggatgtttcggtaggtccaggccgtggttctgcggcgggttctgctgttgcttat
tgtttaggaattaccaatattgaccccattaagtacgacttgctttttgagcgtttcctg
aacccggatcgtgtgtcgatgcccgatattgatattgattttgatgatgaaggccgtggt
cgtgttatggattatgtaatcaataaatacggaaaaaatcaggtagcacagattatcacg
tatggtaaaatggcaaccaaatcggcgattcgtgatacggctcgtgtacttgatttgcct
ttgtttgaagccgatagaattgcaaaactgattccgggaatgatgccttccaaatggaat
ttggctcgttttatttctgaaagtgaagatgaggtaaaaaaagcacttcgatcggatgaa
tttgataatgtaaaagagctgatcgcaattgccaacgaaggtgatttggctggggagact
attcaacaggcaaaaatcctcgaaggatcaatgcgaaataccggaattcatgcctgtggg
gtaattattacgccatcagatattacgaatttcgttccggttacaaccgcaaaagattct
gatctgtatgtaacacagtttgataactcggttgcagaaagtgccggattgctaaaaatg
gatttcttgggtttgaagacccttaccttgataaaagatacggtaaaattagtaaaatac
agaaccggaatcgatctgaatccagatgaatttccaattgacgatccggaaacctacgaa
ctttttcagcgaggagaaacagtaggtatttttcagtatgagtcgcccggaatgcaaaaa
tacatgaaggatttgaaaccgactgtttttggagatttaattgccatgaatgcgttgtat
cgtccgggaccgttagaatatatcccgtctttcgttcgaagaaaaaatggcgaagaggaa
atcaaatacgatttggatgcctgcgaagaatacttgggagaaacctatggaattaccgtt
taccaagagcaggttatgcttttgtcgcaatcattggccgattttacaaaaggtgaggcc
gacgttttgcgtaaagcgatgggtaaaaagcaaaaggatgtcctggacaaaatgaaacct
aagtttgtagaacaagcggcagcaaaaggtcatgatgctaagattttagaaaaaatctgg
aaagactgggaggcttttgcaagttatgcttttaataaatcgcactctacttgttatgcc
tggattgcctatcaaacagcgtatttaaaagcgcatttccctgcagaatatatggctgcg
gttctttcaaataatatgaatgatatcaaacaggtgtccttttttatggaagaatgtaag
cgcatgggcttacaggttttaggccctgatgtcaatgagtcgtattataaatttacggta
aatgataattatgccgttcgttttggtatgggagcgatcaaaggagtaggttctggagcc
gtagccactatcgtcgagaacagaaaagacggtagatacaaatcgatttttgatttggca
aagcgaatagatttacgtgctgctaataaaaaagcaatcgaaaatttagcacttgcagga
ggatttgattcttttgaaggtactacaagagcacaatattttcatgatgagggcgacggt
gttactttttatgaaaaggctatacgttacggttctaaatttcaggaaaacgaaaattca
tctcaagtgagtttgtttggcgaaacaagtgaagtacaaattgcagaacctatagtgcct
ccgtgtgaagattggagcactatggaaaaacttgccaaagaaaaagaagtggtcggaatt
tatatctcgggacatccgttggatgattttagatttgaaatgaagtatttctgcaatgcc
agattagaggccctaaaaagtatggagcagcatgtgggtaaaaacttaacttttgcagga
attatcaataacgtacagcatcgtgtttcgaaaaacggaaaaggctgggctatgtttaat
ctcgaagggtatgatgaaagttatgagtttaggatttttaatgaagaatatctcaagttc
cgccatttcttgattcagaataattttgcacatataaaagtattgataaaagacggctgg
gtgaatcatgatacaggtaaaaaatcagagccgaggctgcaatttgttgaggtaaaacag
ctgcaggatgtcttggaaacttttgcgaaaaaattggttgttttgctgaatattcaagac
ctgaaaaccgaatttattcataaactaagtgatttgtttagccaaaacaaaggagataat
tcggtgacatttgaaattatggagctcgaaaaaattaagcgcttggttgccatagagacc
acaaatgattttacagaaacagaggatgccatttttacagaagaaagtgagaacgacgaa
gcaattgtaggagatactaaaattcaggaagtaaatgaggtagaggagattaatgttgtt
actaaactttctatgcctagtcgtagagtaaaagttaaaatctctcaagaattattagcc
gaattagaaaaaatgcaaatcaactttaaactcaactaa
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integrated database retrieval system
