Flavobacterium flavipigmentatum: LNP22_08950
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Entry
LNP22_08950 CDS
T10330
Symbol
groL
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
ffv Flavobacterium flavipigmentatum
Pathway
ffv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNP22_08950 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffv03019
]
LNP22_08950 (groL)
03110 Chaperones and folding catalysts [BR:
ffv03110
]
LNP22_08950 (groL)
03029 Mitochondrial biogenesis [BR:
ffv03029
]
LNP22_08950 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ffv04147
]
LNP22_08950 (groL)
Enzymes [BR:
ffv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
LNP22_08950 (groL)
Messenger RNA biogenesis [BR:
ffv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
LNP22_08950 (groL)
Chaperones and folding catalysts [BR:
ffv03110
]
Heat shock proteins
HSP60 / Chaperonin
LNP22_08950 (groL)
Mitochondrial biogenesis [BR:
ffv03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
LNP22_08950 (groL)
Exosome [BR:
ffv04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
LNP22_08950 (groL)
Exosomal proteins of other body fluids (saliva and urine)
LNP22_08950 (groL)
Exosomal proteins of breast cancer cells
LNP22_08950 (groL)
Exosomal proteins of colorectal cancer cells
LNP22_08950 (groL)
Exosomal proteins of bladder cancer cells
LNP22_08950 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
NNH2
Pho88
Motif
Other DBs
NCBI-ProteinID:
UFH40388
LinkDB
All DBs
Position
complement(1978726..1980354)
Genome browser
AA seq
542 aa
AA seq
DB search
MAKDIKFDIEARDGLKRGVDALANAVKVTLGPKGRNVIIGKSFGGPTVTKDGVSVAKEIE
LKDPLENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVKEGLKNVAAGANPMDLKRGID
KAVEAIVADLAKQAKVVGSDSDKIKQIASISANNDEVIGELIATAFAKVGKEGVITVEEA
KGTDTFVDVVEGMQFDRGYLSPYFVTNPEKMEVELDSPYILLYDKKVSSLKELLPVLEPV
AQSGKPLLIIAEDVDGEALSTLVVNKLRGALKIAAVKAPGFGDRRKAMLEDIAILTGGTV
ISEERGYTLENTTIEMLGTAKRVAIDKDNTTIVSGAGEADMIKNRVNQIKGQMEATTSDY
DKEKLQERLAKLAGGVAVLYVGAASEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALL
RAKGALAGIKADNADEATGIQIVARAIESPLRTIVENAGLEGSVVVAKVAEGSGDFGYNA
KTDEYVDMLKAGIIDPKKVTRVALENAASVAGMILTTECALIDIKEENGGGMPMGGGMPG
IM
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagatataaaatttgatattgaagcacgtgacggattaaaacgcggtgttgat
gcattagcaaatgctgtaaaagtaactcttggaccaaaaggtcgtaacgtaatcatcgga
aaatcatttggtggaccaacggtcactaaagatggtgtttcggttgcaaaagaaatcgaa
ttaaaagacccattagaaaacatgggggcacaaatggtgaaggaagtagcttctaaaacc
aatgatttagcaggagacggaactacgactgctacagttttagcgcaagctatcgtaaaa
gaaggtttgaaaaacgttgctgcaggtgcaaacccaatggacttgaaacgtggtatcgat
aaagccgttgaagcaatcgttgctgacttggccaaacaagccaaagtagtaggaagtgat
tctgataaaatcaaacaaattgcttctatctctgccaataacgacgaagtgattggtgag
ttaattgctactgctttcgcgaaagtaggtaaagaaggtgttatcacggttgaagaagcc
aaaggaacagacactttcgtggatgttgttgaaggtatgcagtttgacagaggatatctt
tctccttacttcgtaacaaaccctgagaaaatggaagtggaattagattctccatatatc
ttattatacgacaaaaaagtttcttctttaaaagaattactacctgttttagagccggtg
gcacaatcaggaaaaccattattgattattgctgaggatgttgatggagaagctttatca
acgttggttgtaaacaaattaagaggtgctcttaaaattgctgctgtaaaagcgcctggt
tttggagacagaagaaaagcaatgctagaagatatcgcaatcttaactggtggaactgta
atttctgaagaaagaggttatactttagaaaatactactatcgaaatgttaggaactgct
aaaagagttgctatcgataaagacaacactacaattgtaagtggtgctggtgaagctgac
atgatcaaaaatcgtgtgaatcaaattaaaggtcaaatggaagcgacaacttctgattat
gacaaagaaaaattacaagagcgcttggctaaattagccggtggtgttgctgttctttac
gttggtgctgcttctgaagtagaaatgaaagagaaaaaagacagagtagacgatgctttg
cacgcaacccgtgcagctgtagaagaaggaattgttgctggtggtggtgttgctttatta
agagcaaaaggtgcattagcaggaattaaagctgacaacgctgacgaggcaaccggaatc
cagattgtggctcgtgctattgagtctcctttgagaacgattgttgaaaatgctggcctt
gaaggttctgttgttgtggctaaagttgccgaaggttctggtgattttggatacaacgca
aaaactgacgaatatgtagacatgctgaaagcaggaatcatcgatcctaaaaaagtaact
cgtgtagcacttgagaatgctgcttctgttgctggaatgatcctgactacagaatgtgcc
ttgattgatattaaagaagaaaacggaggcggaatgccaatgggtggcggtatgccagga
atcatgtaa
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